View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0607_high_12 (Length: 230)
Name: NF0607_high_12
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0607_high_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 30500893 - 30501011
Alignment:
| Q |
1 |
gatactggttgtactagttacatgagaaaagttatccactatattgtggagattgtaccaaaatctgattttccccaaaagcaagctggttatggtagag |
100 |
Q |
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| T |
30500893 |
gatactggttgtactaatgacatgagaaaagttatccaccatattgtggagatcgtaccaaaatctgattttccccaaaagcaagctggttatggtagag |
30500992 |
T |
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| Q |
101 |
ataacaatgaatatccatt |
119 |
Q |
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||| ||||||||||||||| |
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| T |
30500993 |
atagcaatgaatatccatt |
30501011 |
T |
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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Original strand, 30501361 - 30501404
Alignment:
| Q |
125 |
atatagtatgatatatattccgactttgttagataagtattgta |
168 |
Q |
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| T |
30501361 |
atatagtatgatatatatcccgactttattagataagtattgta |
30501404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 230
Target Start/End: Original strand, 42430783 - 42430821
Alignment:
| Q |
192 |
caaaatgaaattatataccaataaaaatagtagctccca |
230 |
Q |
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| T |
42430783 |
caaaatggaattatataccaatacaaatagtagctccca |
42430821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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