View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0607_low_11 (Length: 331)

Name: NF0607_low_11
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0607_low_11
NF0607_low_11
[»] chr6 (1 HSPs)
chr6 (21-331)||(14497946-14498253)
[»] chr4 (1 HSPs)
chr4 (27-196)||(41879202-41879366)
[»] chr8 (1 HSPs)
chr8 (33-175)||(12247728-12247865)
[»] chr7 (2 HSPs)
chr7 (21-104)||(8723372-8723455)
chr7 (21-107)||(44846023-44846109)
[»] chr2 (1 HSPs)
chr2 (21-107)||(8384616-8384702)
[»] chr5 (1 HSPs)
chr5 (27-60)||(42259094-42259127)
[»] chr3 (2 HSPs)
chr3 (27-107)||(7935759-7935839)
chr3 (133-169)||(16297299-16297335)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 331
Target Start/End: Original strand, 14497946 - 14498253
Alignment:
Q  21 tgaattacctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgatcatatgatgtcaa 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||   ||||||  ||    
T  14497946 tgaatgacctgtataatgaataaattggtgaaaatgctcactagtattttcagtatcgactccagacacgccaatccaagacttgat---atgatgctaa 14498042  T
Q  121 agcgaaccaattaaacatcacaatgaaggaacaaatgggatgccgactcttcattgtcgcatcctgaaacgcacatagttttgtcttgtcctacaatgtt 220  Q
    ||| ||||||  |||||||||||||||||||||||||||| |||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||    
T  14498043 agcaaaccaa--aaacatcacaatgaaggaacaaatgggaagccgactcttcattgcagcatcccgaaacgcacatagttttgtcttgtcctacaatgtt 14498140  T
Q  221 ttgtctggtacttaataatttgctaatcaaacacaccttgca--tatatgcaaggtgcatttgactaattttgtcggagaatttattggaggtacaaatt 318  Q
    |||||||||||||||||||||||||||||||| |||||| ||  |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  14498141 ttgtctggtacttaataatttgctaatcaaacgcaccttccatgtatatgcaaggtgcgtttgactaattttgtcggagaattcattggaggtacaaatt 14498240  T
Q  319 gataaatgatttt 331  Q
    |||||||||||||    
T  14498241 gataaatgatttt 14498253  T

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Target: chr4 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 27 - 196
Target Start/End: Complemental strand, 41879366 - 41879202
Alignment:
Q  27 acctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgatcatatgatgtcaaagcgaa 126  Q
    ||||||||||||||||||||| ||||| || ||||||||||||||| |||| |||||||||| | |||||||||||| |   |||||||  ||||||||     
T  41879366 acctgtataatgaataaattgttgaaattgttcactaatattttcagtatctactccagacatgtcaatccaagaccag---atatgataccaaagcgat 41879270  T
Q  127 ccaattaaacatcacaatgaaggaacaaatgggatgccgactcttcattgtcgcatcctgaaacgcacat 196  Q
    ||||  |||||| |||||||||||||||||| | |||||||||| ||||| |||| ||| |||| |||||    
T  41879269 ccaa--aaacatgacaatgaaggaacaaatgtgttgccgactctgcattgacgcacccttaaacacacat 41879202  T

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Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 12247865 - 12247728
Alignment:
Q  33 ataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgatcatatgatgtcaaagcgaaccaatt 132  Q
    |||||||||||||||||||||||||||||  |||||||||  ||| |  ||||| | ||||||| || |||||   ||||| |||||||||||||| |      
T  12247865 ataatgaataaattggtgaaaatgctcacatatattttcagcatctataccagatatgccaatctaacacctg---atatgctgtcaaagcgaaccga-- 12247771  T
Q  133 aaacatcacaatgaaggaacaaatgggatgccgactcttcatt 175  Q
    |||||| ||||||||||||||||||||||| |||||| |||||    
T  12247770 aaacataacaatgaaggaacaaatgggatgtcgactcatcatt 12247728  T

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Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 104
Target Start/End: Complemental strand, 8723455 - 8723372
Alignment:
Q  21 tgaattacctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacct 104  Q
    ||||| || ||||||||||||||||||||||||||| ||||||||||||| | |||    |||| |||||||||||||||||||    
T  8723455 tgaatgacttgtataatgaataaattggtgaaaatggtcactaatattttgagtatttgttccacacacgccaatccaagacct 8723372  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 44846109 - 44846023
Alignment:
Q  21 tgaattacctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgat 107  Q
    ||||| ||||||||||||| |||||||    |||||||||||||||||   |  ||| || |||||||| |||||||||||||||||    
T  44846109 tgaatgacctgtataatgagtaaattgaaagaaatgctcactaatattaagataatctacaccagacactccaatccaagacctgat 44846023  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Original strand, 8384616 - 8384702
Alignment:
Q  21 tgaattacctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgat 107  Q
    ||||| ||||||||||||| |||||||    ||||||||||||||||| | ||  || || |||||||| ||||||||| |||||||    
T  8384616 tgaatgacctgtataatgagtaaattgaaagaaatgctcactaatattgtgaaggtcaacaccagacacaccaatccaatacctgat 8384702  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 42259094 - 42259127
Alignment:
Q  27 acctgtataatgaataaattggtgaaaatgctca 60  Q
    |||||||||||||||||||||| |||||||||||    
T  42259094 acctgtataatgaataaattggagaaaatgctca 42259127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 7935759 - 7935839
Alignment:
Q  27 acctgtataatgaataaattggtgaaaatgctcactaatattttcaatatcgactccagacacgccaatccaagacctgat 107  Q
    ||||| ||||||||||||||||| ||||||  |||| | ||| ||| |||| || |||  ||||||||||||||| |||||    
T  7935759 acctgaataatgaataaattggtaaaaatgggcactgacattgtcagtatcaacaccaatcacgccaatccaagatctgat 7935839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 16297335 - 16297299
Alignment:
Q  133 aaacatcacaatgaaggaacaaatgggatgccgactc 169  Q
    |||||||||||||||| ||||| ||||||||||||||    
T  16297335 aaacatcacaatgaagaaacaagtgggatgccgactc 16297299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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