View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0607_low_14 (Length: 299)

Name: NF0607_low_14
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0607_low_14
NF0607_low_14
[»] chr7 (33 HSPs)
chr7 (160-219)||(32541334-32541393)
chr7 (34-93)||(32541207-32541266)
chr7 (168-222)||(38188941-38188995)
chr7 (44-92)||(38188916-38188964)
chr7 (171-222)||(7495309-7495360)
chr7 (180-222)||(7792253-7792295)
chr7 (168-219)||(38189045-38189095)
chr7 (43-93)||(12847989-12848039)
chr7 (171-221)||(21146281-21146330)
chr7 (43-92)||(518337-518386)
chr7 (43-92)||(4582096-4582145)
chr7 (43-92)||(7792169-7792218)
chr7 (43-92)||(16730128-16730177)
chr7 (43-92)||(17707200-17707249)
chr7 (168-213)||(18927860-18927905)
chr7 (43-92)||(32813060-32813109)
chr7 (43-92)||(37468190-37468239)
chr7 (43-92)||(45296334-45296383)
chr7 (168-220)||(7495348-7495400)
chr7 (43-86)||(25676529-25676572)
chr7 (186-221)||(33618312-33618347)
chr7 (168-222)||(576267-576321)
chr7 (168-222)||(25676416-25676470)
chr7 (168-213)||(518363-518408)
chr7 (43-92)||(557718-557767)
chr7 (168-213)||(4582074-4582119)
chr7 (168-213)||(16730154-16730199)
chr7 (168-213)||(17707226-17707271)
chr7 (43-92)||(24007008-24007057)
chr7 (168-213)||(32813086-32813131)
chr7 (43-92)||(40459592-40459641)
chr7 (168-213)||(45296360-45296405)
chr7 (178-222)||(33618354-33618398)
[»] chr5 (20 HSPs)
chr5 (168-222)||(19265352-19265406)
chr5 (43-92)||(669578-669627)
chr5 (43-92)||(2851389-2851438)
chr5 (43-92)||(10642370-10642419)
chr5 (43-92)||(15295532-15295581)
chr5 (45-86)||(19265410-19265451)
chr5 (43-92)||(21119622-21119671)
chr5 (43-92)||(30984994-30985043)
chr5 (43-92)||(35858920-35858969)
chr5 (43-86)||(25104892-25104935)
chr5 (43-86)||(25163985-25164028)
chr5 (168-222)||(41308120-41308174)
chr5 (168-213)||(669604-669649)
chr5 (168-213)||(9616913-9616958)
chr5 (43-92)||(9616935-9616984)
chr5 (168-213)||(10642396-10642441)
chr5 (168-213)||(15295558-15295603)
chr5 (168-213)||(21119600-21119645)
chr5 (168-213)||(30985020-30985065)
chr5 (168-213)||(35858898-35858943)
[»] chr3 (34 HSPs)
chr3 (167-222)||(27263564-27263619)
chr3 (164-222)||(34848397-34848455)
chr3 (168-222)||(35367017-35367070)
chr3 (170-222)||(35366982-35367034)
chr3 (167-218)||(33987640-33987691)
chr3 (164-218)||(34848463-34848517)
chr3 (171-222)||(18364527-18364578)
chr3 (186-221)||(18365417-18365452)
chr3 (168-218)||(35367053-35367103)
chr3 (43-92)||(14888-14937)
chr3 (43-92)||(5409709-5409758)
chr3 (168-213)||(5409735-5409780)
chr3 (43-92)||(21913282-21913331)
chr3 (43-92)||(33047788-33047837)
chr3 (43-92)||(40997130-40997179)
chr3 (43-92)||(41950322-41950371)
chr3 (43-92)||(44926678-44926727)
chr3 (43-92)||(50902156-50902205)
chr3 (46-86)||(27263658-27263698)
chr3 (168-222)||(14601146-14601200)
chr3 (168-218)||(40316822-40316871)
chr3 (168-222)||(45691889-45691943)
chr3 (168-213)||(14866-14911)
chr3 (43-92)||(14600302-14600351)
chr3 (43-92)||(19286328-19286377)
chr3 (168-213)||(19286354-19286399)
chr3 (168-213)||(21913260-21913305)
chr3 (168-213)||(33047814-33047859)
chr3 (43-92)||(35366955-35367003)
chr3 (193-222)||(40316854-40316883)
chr3 (168-213)||(40997156-40997201)
chr3 (168-213)||(41950300-41950345)
chr3 (168-213)||(50902134-50902179)
chr3 (171-203)||(33987736-33987768)
[»] chr2 (46 HSPs)
chr2 (168-219)||(43871262-43871313)
chr2 (168-218)||(42553921-42553971)
chr2 (171-221)||(5616837-5616887)
chr2 (168-222)||(38285887-38285941)
chr2 (43-92)||(45326383-45326432)
chr2 (171-222)||(9171357-9171408)
chr2 (171-222)||(37486344-37486395)
chr2 (168-222)||(86244-86298)
chr2 (168-222)||(17153622-17153676)
chr2 (180-222)||(27247186-27247228)
chr2 (43-93)||(28137423-28137473)
chr2 (168-222)||(34041671-34041725)
chr2 (43-88)||(86127-86172)
chr2 (180-221)||(5616984-5617025)
chr2 (43-92)||(9302761-9302810)
chr2 (43-92)||(12391819-12391868)
chr2 (43-92)||(27247139-27247188)
chr2 (43-92)||(35466768-35466817)
chr2 (43-92)||(35860562-35860611)
chr2 (168-221)||(36213276-36213329)
chr2 (43-92)||(38285783-38285832)
chr2 (171-216)||(38285812-38285857)
chr2 (43-92)||(42453246-42453295)
chr2 (180-221)||(42553812-42553853)
chr2 (180-221)||(43871147-43871188)
chr2 (44-92)||(5616809-5616857)
chr2 (178-218)||(34041492-34041532)
chr2 (43-86)||(36213141-36213184)
chr2 (168-218)||(5617108-5617158)
chr2 (172-222)||(26275369-26275419)
chr2 (43-93)||(26275399-26275449)
chr2 (34-92)||(39271325-39271383)
chr2 (175-221)||(39272011-39272057)
chr2 (168-222)||(45326271-45326325)
chr2 (168-213)||(9302787-9302832)
chr2 (168-213)||(12391797-12391842)
chr2 (168-213)||(28137402-28137447)
chr2 (168-213)||(35466794-35466839)
chr2 (168-213)||(37426231-37426276)
chr2 (43-92)||(37426253-37426302)
chr2 (43-92)||(37486315-37486364)
chr2 (169-222)||(39271361-39271414)
chr2 (43-92)||(41759617-41759666)
chr2 (168-213)||(42453272-42453317)
chr2 (43-92)||(43871100-43871149)
chr2 (34-86)||(17153511-17153563)
[»] chr1 (16 HSPs)
chr1 (168-222)||(34306130-34306184)
chr1 (168-222)||(34306093-34306147)
chr1 (185-221)||(43623285-43623321)
chr1 (168-222)||(17306583-17306637)
chr1 (43-92)||(34306028-34306077)
chr1 (43-92)||(43055351-43055400)
chr1 (180-221)||(43637586-43637627)
chr1 (43-92)||(50579634-50579683)
chr1 (34-86)||(9398507-9398559)
chr1 (178-222)||(17306620-17306664)
chr1 (185-221)||(43995690-43995726)
chr1 (43-86)||(52869438-52869481)
chr1 (168-226)||(33112997-33113055)
chr1 (168-222)||(43055377-43055430)
chr1 (43-92)||(25699768-25699817)
chr1 (168-213)||(50579660-50579705)
[»] chr8 (27 HSPs)
chr8 (43-93)||(12110380-12110430)
chr8 (180-221)||(14123749-14123790)
chr8 (179-222)||(43748962-43749005)
chr8 (168-222)||(26758686-26758740)
chr8 (43-92)||(2378403-2378452)
chr8 (43-92)||(4599343-4599392)
chr8 (168-232)||(12110337-12110404)
chr8 (43-92)||(12391626-12391675)
chr8 (43-92)||(26758551-26758600)
chr8 (43-92)||(30591379-30591428)
chr8 (43-92)||(30887240-30887289)
chr8 (43-92)||(34852541-34852590)
chr8 (185-217)||(11929331-11929363)
chr8 (185-220)||(11941886-11941921)
chr8 (188-222)||(11910313-11910347)
chr8 (168-202)||(11910330-11910364)
chr8 (188-222)||(11941307-11941341)
chr8 (168-222)||(34740737-34740791)
chr8 (168-213)||(4599321-4599366)
chr8 (168-213)||(12391604-12391649)
chr8 (168-213)||(26758577-26758622)
chr8 (168-213)||(30591405-30591450)
chr8 (168-213)||(30887218-30887263)
chr8 (43-92)||(31960473-31960522)
chr8 (168-213)||(34852567-34852612)
chr8 (43-92)||(45264037-45264086)
chr8 (49-85)||(12505261-12505297)
[»] chr6 (16 HSPs)
chr6 (168-222)||(17508653-17508706)
chr6 (169-222)||(13504617-13504670)
chr6 (180-222)||(13507452-13507494)
chr6 (168-222)||(17508616-17508670)
chr6 (43-92)||(2523815-2523864)
chr6 (43-92)||(10838948-10838997)
chr6 (43-92)||(25087229-25087278)
chr6 (43-92)||(25510597-25510646)
chr6 (43-92)||(30592586-30592635)
chr6 (43-93)||(7807324-7807374)
chr6 (168-222)||(25510490-25510544)
chr6 (168-213)||(2523841-2523886)
chr6 (168-213)||(25087207-25087252)
chr6 (168-213)||(25510575-25510620)
chr6 (43-92)||(26047007-26047056)
chr6 (43-92)||(34783742-34783791)
[»] chr4 (24 HSPs)
chr4 (180-222)||(19183878-19183920)
chr4 (168-222)||(19914703-19914757)
chr4 (180-222)||(27551631-27551673)
chr4 (168-222)||(30548421-30548475)
chr4 (168-222)||(35234045-35234098)
chr4 (168-222)||(1757170-1757225)
chr4 (43-92)||(1757144-1757193)
chr4 (43-92)||(20254792-20254841)
chr4 (43-92)||(26496703-26496752)
chr4 (43-92)||(27551560-27551609)
chr4 (43-92)||(34150715-34150764)
chr4 (43-92)||(35234122-35234171)
chr4 (43-92)||(36668246-36668295)
chr4 (43-92)||(49318599-49318648)
chr4 (179-222)||(3075246-3075289)
chr4 (34-93)||(30548451-30548510)
chr4 (168-213)||(3151001-3151046)
chr4 (43-92)||(3151023-3151072)
chr4 (169-222)||(16335484-16335537)
chr4 (43-92)||(21232877-21232926)
chr4 (168-213)||(26496729-26496774)
chr4 (168-213)||(34150741-34150786)
chr4 (168-213)||(36668224-36668269)
chr4 (168-213)||(49318577-49318622)
[»] scaffold0365 (2 HSPs)
scaffold0365 (43-92)||(1068-1117)
scaffold0365 (168-213)||(1046-1091)
[»] scaffold0088 (1 HSPs)
scaffold0088 (185-222)||(41445-41482)
[»] scaffold0024 (1 HSPs)
scaffold0024 (43-92)||(95327-95376)
[»] scaffold0294 (1 HSPs)
scaffold0294 (34-92)||(5764-5822)
[»] scaffold0079 (1 HSPs)
scaffold0079 (169-222)||(57323-57376)


Alignment Details
Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 32541334 - 32541393
Alignment:
Q  160 cttgcaaattgtaacaacttttatcattattaggttatattatccttgtaacaactttta 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32541334 cttgcaaattgtaacaacttttatcattattaggttatattatccttgtaacaactttta 32541393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 32541207 - 32541266
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||    
T  32541207 tatctctagattaatttaaaatctcaatattatcttcgtaacaacttttattaatattaa 32541266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 38188941 - 38188995
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||| |||||    
T  38188941 ttgtaacaacttttattattattaggttatattatcattgtaacaacttctatta 38188995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 38188916 - 38188964
Alignment:
Q  44 ttaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||    
T  38188916 ttaatttaaaatctcaatattatccttgtaacaacttttattattatta 38188964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 7495360 - 7495309
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| ||||||||||||| ||||||||||| ||||||||||||||||||    
T  7495360 taacaacatttatcattattaagttatattatctttgtaacaacttttatta 7495309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 7792253 - 7792295
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  7792253 ttattattattaggttatattatccttgtaacaacttttatta 7792295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 38189045 - 38189095
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttta 219  Q
    ||||||||| |||||| |||||||||||||||||| ||||||||||||||||    
T  38189045 ttgtaacaagttttat-attattaggttatattattcttgtaacaactttta 38189095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12848039 - 12847989
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||    
T  12848039 attaatttcaaatctcaatattaaccttgtaacaacttttattattattaa 12847989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 21146281 - 21146330
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||    
T  21146281 taacaacatttatcattattaggttatattat-cttgaaacaacttttatt 21146330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 518337 - 518386
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  518337 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 518386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 4582145 - 4582096
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  4582145 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 4582096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 7792169 - 7792218
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  7792169 attaatttaaaatctcaatattatccttataacaacatttattattatta 7792218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 16730128 - 16730177
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  16730128 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 16730177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 17707200 - 17707249
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  17707200 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 17707249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 18927905 - 18927860
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||    
T  18927905 ttgtaacaacttttattattattagattatattatctttgtaacaa 18927860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 32813060 - 32813109
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  32813060 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 32813109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 37468239 - 37468190
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  37468239 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 37468190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 45296334 - 45296383
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  45296334 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 45296383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 7495400 - 7495348
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttat 220  Q
    |||||||||||||||| |||||||  ||||||||||||| ||||||| |||||    
T  7495400 ttgtaacaacttttattattattaaattatattatccttctaacaacatttat 7495348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 25676572 - 25676529
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||    
T  25676572 attaatttcaaatctcaatattaaccttgtaacaacttttatta 25676529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 221
Target Start/End: Complemental strand, 33618347 - 33618312
Alignment:
Q  186 ttattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||||||||||||||||| ||||||||||||||    
T  33618347 ttattaggttatattatccttataacaacttttatt 33618312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 576267 - 576321
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||| || |||||| ||||||  |||||||| |||||||||||||||||||||    
T  576267 ttgtaagaatttttattattattttgttatattttccttgtaacaacttttatta 576321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25676470 - 25676416
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||||||  |||||||| | |||||||||||||||||||    
T  25676470 ttgtaacaatttttattattattttgttatatttttcttgtaacaacttttatta 25676416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 518363 - 518408
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  518363 ttgtaacaacttttattattattagattatattatttttgtaacaa 518408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 557718 - 557767
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||  |||||||||||||| ||| |||||||||||||||| |||||    
T  557718 attaattccaaatctcaatattaaccttgtaacaacttttattattatta 557767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 4582119 - 4582074
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  4582119 ttgtaacaacttttattattattagattatattatttttgtaacaa 4582074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 16730154 - 16730199
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  16730154 ttgtaacaacttttattattattagattatattatttttgtaacaa 16730199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 17707226 - 17707271
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  17707226 ttgtaacaacttttattattattagattatattatttttgtaacaa 17707271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 24007008 - 24007057
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||||| | ||||||| | |||||| |||||    
T  24007008 attaatttaaaatctcaatattatctttgtaacaattattattattatta 24007057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 32813086 - 32813131
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  32813086 ttgtaacaacttttattattattagattatattatttttgtaacaa 32813131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 40459592 - 40459641
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||| | |  ||||||||||||||| |||||    
T  40459592 attaatttaaaatctcaatattaactttataacaacttttattattatta 40459641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 45296360 - 45296405
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  45296360 ttgtaacaacttttattattattagattatattatttttgtaacaa 45296405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 33618398 - 33618354
Alignment:
Q  178 ttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||| ||||||| ||||||||||||||  ||||||||||||||    
T  33618398 ttttattattattatgttatattatcctttaaacaacttttatta 33618354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 19265406 - 19265352
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  19265406 ttgtaacaacttttatcattattaggttatattatccttgtaacatcttttatta 19265352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 669578 - 669627
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  669578 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 669627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2851438 - 2851389
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  2851438 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 2851389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 10642370 - 10642419
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  10642370 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 10642419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 15295532 - 15295581
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  15295532 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 15295581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 19265451 - 19265410
Alignment:
Q  45 taatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    ||||||||||||||||||||||| | ||||||||||||||||    
T  19265451 taatttaaaatctcaatattatcattgtaacaacttttatta 19265410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 21119671 - 21119622
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  21119671 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 21119622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30984994 - 30985043
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  30984994 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 30985043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 35858969 - 35858920
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  35858969 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 35858920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 25104935 - 25104892
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||    
T  25104935 attaatttcaaatctcaatattaaccttgtaacaacttttatta 25104892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 25164028 - 25163985
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||    
T  25164028 attaatttcaaatctcaatattaaccttgtaacaacttttatta 25163985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 41308120 - 41308174
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||||||  |||||||| | |||||||||||||||||||    
T  41308120 ttgtaacaatttttattattattttgttatatttttcttgtaacaacttttatta 41308174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 669604 - 669649
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  669604 ttgtaacaacttttattattattagattatattatttttgtaacaa 669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 9616958 - 9616913
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  9616958 ttgtaacaacttttattattattagattatattatttttgtaacaa 9616913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 9616984 - 9616935
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| ||||||||||||||  || |||||||||||||||| |||||    
T  9616984 attaatttcaaatctcaatattaatcttgtaacaacttttattattatta 9616935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 10642396 - 10642441
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  10642396 ttgtaacaacttttattattattagattatattatttttgtaacaa 10642441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 15295558 - 15295603
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  15295558 ttgtaacaacttttattattattagattatattatttttgtaacaa 15295603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 21119645 - 21119600
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  21119645 ttgtaacaacttttattattattagattatattatttttgtaacaa 21119600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 30985020 - 30985065
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  30985020 ttgtaacaacttttattattattagattatattatttttgtaacaa 30985065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 35858943 - 35858898
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  35858943 ttgtaacaacttttattattattagattatattatttttgtaacaa 35858898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 27263619 - 27263564
Alignment:
Q  167 attgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  27263619 attgtaacaacttttattattattaggttatattatccttgtaacaatttttatta 27263564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 222
Target Start/End: Complemental strand, 34848455 - 34848397
Alignment:
Q  164 caaattgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| |||||||||||| ||||||||||||||||||| |||||| |||||||||||    
T  34848455 caaattgcaacaacttttattattattaggttatattatcattgtaataacttttatta 34848397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 35367017 - 35367070
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  35367017 ttgtaacaacttttattattattaggttatattat-cttgtaacaacttttatta 35367070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 35366982 - 35367034
Alignment:
Q  170 gtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||    
T  35366982 gtaacaacatttattattattaggttatattatctttgtaacaacttttatta 35367034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 218
Target Start/End: Complemental strand, 33987691 - 33987640
Alignment:
Q  167 attgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    ||||||||||||||||| ||||||| |||||||||||||||| |||||||||    
T  33987691 attgtaacaacttttattattattaagttatattatccttgtgacaactttt 33987640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 218
Target Start/End: Complemental strand, 34848517 - 34848463
Alignment:
Q  164 caaattgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    ||||||| | |||||||||| |||||||||||||| |||||||||||||||||||    
T  34848517 caaattgcagcaacttttattattattaggttatactatccttgtaacaactttt 34848463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 18364527 - 18364578
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| ||||| |||||||| |||||||||||||| ||||||||||||||    
T  18364527 taacaacatttattattattagattatattatccttgaaacaacttttatta 18364578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 186 - 221
Target Start/End: Original strand, 18365417 - 18365452
Alignment:
Q  186 ttattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||||||||||||||||||||||||||||||||    
T  18365417 ttattaggttatattatccttgtaacaacttttatt 18365452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 35367053 - 35367103
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    |||||||||||||||| |||| ||||||||||||||||| ||| |||||||    
T  35367053 ttgtaacaacttttattattaataggttatattatccttctaataactttt 35367103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 14937 - 14888
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  14937 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 14888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 5409709 - 5409758
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  5409709 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 5409758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 5409735 - 5409780
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||    
T  5409735 ttgtaacaacttttattattattagattatattatctttgtaacaa 5409780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 21913331 - 21913282
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  21913331 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 21913282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 33047788 - 33047837
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  33047788 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 33047837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 40997130 - 40997179
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  40997130 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 40997179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 41950371 - 41950322
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  41950371 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 41950322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 44926678 - 44926727
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| |||  |||||||||||||||||||||    
T  44926678 attaatttcaaatctcaatattaaccttataacaacttttattactatta 44926727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 50902205 - 50902156
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  50902205 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 50902156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 27263698 - 27263658
Alignment:
Q  46 aatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  27263698 aatttaaaatctcaatattatccttataacaacttttatta 27263658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 14601146 - 14601200
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||| || |||||| ||||||  |||||||| |||||||||||||||||||||    
T  14601146 ttgtaataatttttattattattttgttatattttccttgtaacaacttttatta 14601200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 40316871 - 40316822
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    |||||||||||||||| ||||||| | ||||||||||||||||||| ||||    
T  40316871 ttgtaacaacttttattattatta-gatatattatccttgtaacaaatttt 40316822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 45691943 - 45691889
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||||||  |||||||| ||||| |||||||||||||||    
T  45691943 ttgtaacaatttttattattattttgttatattttccttctaacaacttttatta 45691889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 14911 - 14866
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  14911 ttgtaacaacttttattattattagattatattatttttgtaacaa 14866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 14600302 - 14600351
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| | | |||||||||||||||| |||||    
T  14600302 attaatttcaaatctcaatattaactttgtaacaacttttattattatta 14600351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 19286328 - 19286377
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| ||||||||||||||  || |||||||||||||||| |||||    
T  19286328 attaatttcaaatctcaatattaatcttgtaacaacttttattattatta 19286377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 19286354 - 19286399
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  19286354 ttgtaacaacttttattattattagattatattatttttgtaacaa 19286399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 21913305 - 21913260
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  21913305 ttgtaacaacttttattattattagattatattatttttgtaacaa 21913260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 33047814 - 33047859
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  33047814 ttgtaacaacttttattattattagattatattatttttgtaacaa 33047859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 35366955 - 35367003
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||| || |||||||| ||||||| |||||    
T  35366955 attaatttaaaatctcaatattat-ctagtaacaacatttattattatta 35367003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 40316883 - 40316854
Alignment:
Q  193 gttatattatccttgtaacaacttttatta 222  Q
    ||||||||||||||||||||||||||||||    
T  40316883 gttatattatccttgtaacaacttttatta 40316854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 40997156 - 40997201
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  40997156 ttgtaacaacttttattattattagattatattatttttgtaacaa 40997201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 41950345 - 41950300
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  41950345 ttgtaacaacttttattattattagattatattatttttgtaacaa 41950300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 50902179 - 50902134
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  50902179 ttgtaacaacttttattattattagattatattatttttgtaacaa 50902134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 33987768 - 33987736
Alignment:
Q  171 taacaacttttatcattattaggttatattatc 203  Q
    ||||||||||||| |||||||||||||||||||    
T  33987768 taacaacttttattattattaggttatattatc 33987736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 46)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 43871262 - 43871313
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttta 219  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||    
T  43871262 ttgtaacaacttttattattattaagttatattatccttgtaacaactttta 43871313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 42553921 - 42553971
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  42553921 ttgtaacaacttttattattattaggttatattatccttgtaaaaactttt 42553971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 171 - 221
Target Start/End: Original strand, 5616837 - 5616887
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  5616837 taacaacatttattattattaggttatattatctttgtaacaacttttatt 5616887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 38285887 - 38285941
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||||||||||||||| ||||||| | |||| |||||||||||    
T  38285887 ttgtaacaacttttatcattattaggttgtattatcatcgtaataacttttatta 38285941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 45326432 - 45326383
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  45326432 attaatttcaaatctcaatattaaccttgtaacaacttttattactatta 45326383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 9171357 - 9171408
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| ||||| ||||||| ||||||||||||||| ||||||||||||||    
T  9171357 taacaacatttattattattaagttatattatccttgaaacaacttttatta 9171408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 222
Target Start/End: Original strand, 37486344 - 37486395
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| ||||| ||||||||||||||||||||||  ||||||||||||||    
T  37486344 taacaacatttattattattaggttatattatcctttaaacaacttttatta 37486395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 86244 - 86298
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||| |||||||  ||||||||||| |||||| |||||||||||||||||||    
T  86244 ttgtaacgacttttaatattattaggttgtattattcttgtaacaacttttatta 86298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 17153622 - 17153676
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||||||  |||||||| |||||||||||||||||||||    
T  17153622 ttgtaacaatttttattattattttgttatattttccttgtaacaacttttatta 17153676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 27247186 - 27247228
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||| ||||||||||||||||||||||||||||||    
T  27247186 ttattattattaagttatattatccttgtaacaacttttatta 27247228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 28137473 - 28137423
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| ||||||    
T  28137473 attaatttcaaatctcaatattaaccttgtaacaacttttattattattaa 28137423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 34041725 - 34041671
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||||| |||  ||||||| | ||||||||||||||||||||||||||||    
T  34041725 ttgtaacaactgttactattattatgatatattatccttgtaacaacttttatta 34041671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 86127 - 86172
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattact 88  Q
    ||||||||||||||||||||||||| | |||||||| |||||||||    
T  86127 attaatttaaaatctcaatattatctttgtaacaacatttattact 86172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 5616984 - 5617025
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||| ||||||||||||||||||| |||||||||||||||||    
T  5616984 ttattattattaggttatattatctttgtaacaacttttatt 5617025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 9302761 - 9302810
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  9302761 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 9302810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12391868 - 12391819
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  12391868 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 12391819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 27247139 - 27247188
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||| ||| ||||||||||| |||| |||||    
T  27247139 attaatttaaaatctcaatattaaccttgtaacaactttaattattatta 27247188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 35466768 - 35466817
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  35466768 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 35466817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 35860611 - 35860562
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  35860611 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 35860562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 36213276 - 36213329
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||    
T  36213276 ttgtaataactttttttattattaggctatatcatccttgtaacaacttttatt 36213329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 38285783 - 38285832
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  38285783 attaatttaaaatctcaatattatccttataacaacatttattattatta 38285832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 216
Target Start/End: Original strand, 38285812 - 38285857
Alignment:
Q  171 taacaacttttatcattattaggttatattatccttgtaacaactt 216  Q
    ||||||| ||||| ||||||||||||||||||||||| ||||||||    
T  38285812 taacaacatttattattattaggttatattatccttgaaacaactt 38285857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 42453246 - 42453295
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  42453246 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 42453295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 42553812 - 42553853
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  42553812 ttattattattaggttatattatccttgaaacaacttttatt 42553853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 43871147 - 43871188
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||| ||||||||||||||||||||||| |||||||||||||    
T  43871147 ttattattattaggttatattatccttgaaacaacttttatt 43871188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 5616809 - 5616857
Alignment:
Q  44 ttaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  5616809 ttaatttaaaatctcaatattatccttataacaacatttattattatta 5616857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 218
Target Start/End: Complemental strand, 34041532 - 34041492
Alignment:
Q  178 ttttatcattattaggttatattatccttgtaacaactttt 218  Q
    |||||| ||||||||||||||||||||||||| ||||||||    
T  34041532 ttttattattattaggttatattatccttgtagcaactttt 34041492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Original strand, 36213141 - 36213184
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    |||||||||||||||||||||||||||  ||||||| |||||||    
T  36213141 attaatttaaaatctcaatattatccttataacaacatttatta 36213184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 218
Target Start/End: Original strand, 5617108 - 5617158
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttt 218  Q
    |||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||    
T  5617108 ttgtaacaacctttattattattaggttatattatctttgcaacaattttt 5617158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 26275419 - 26275369
Alignment:
Q  172 aacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||| ||||| ||||||| ||||||||||||||| ||||| ||||||||    
T  26275419 aacaacatttattattattaagttatattatccttgaaacaaattttatta 26275369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 26275449 - 26275399
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    |||||||||||||||||||||||||||   |||||| ||||||| ||||||    
T  26275449 attaatttaaaatctcaatattatccttacaacaacatttattattattaa 26275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 39271325 - 39271383
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||| || ||||||||||||||||||||||||||  |||||||| |||| || |||||    
T  39271325 tatctttagattaatttaaaatctcaatattatccatgtaacaacatttagtattatta 39271383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 39272011 - 39272057
Alignment:
Q  175 aacttttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||||| ||||| |||||||||||||| | ||||||||||||||    
T  39272011 aacttttattattatcaggttatattatccctttaacaacttttatt 39272057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 45326325 - 45326271
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||||||  |||||||| ||||| |||||||||||||||    
T  45326325 ttgtaacaatttttattattattttgttatattttccttataacaacttttatta 45326271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 9302787 - 9302832
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  9302787 ttgtaacaacttttattattattagattatattatttttgtaacaa 9302832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 12391842 - 12391797
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  12391842 ttgtaacaacttttattattattagattatattatttttgtaacaa 12391797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 28137447 - 28137402
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||  |||||||||| |||||||||    
T  28137447 ttgtaacaacttttattattattaaattatattatctttgtaacaa 28137402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 35466794 - 35466839
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  35466794 ttgtaacaacttttattattattagattatattatttttgtaacaa 35466839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 37426276 - 37426231
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  37426276 ttgtaacaacttttattattattagattatattatttttgtaacaa 37426231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 37426302 - 37426253
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| ||||||||||||||  || |||||||||||||||| |||||    
T  37426302 attaatttcaaatctcaatattaaacttgtaacaacttttattattatta 37426253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 37486315 - 37486364
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||||| |  ||||||| ||||||| |||||    
T  37486315 attaatttaaaatctcaatattatctttataacaacatttattattatta 37486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 39271361 - 39271414
Alignment:
Q  169 tgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| ||||  ||||||||||||||||||| ||  ||||||||||||||    
T  39271361 tgtaacaacatttagtattattaggttatattatctttaaaacaacttttatta 39271414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 41759617 - 41759666
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| ||||| |||||||||| |||||    
T  41759617 attaatttcaaatctcaatattaaccttgtaacgacttttattattatta 41759666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 42453272 - 42453317
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  42453272 ttgtaacaacttttattattattagattatattatttttgtaacaa 42453317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 43871100 - 43871149
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||||||  || |||| ||||||| |||||    
T  43871100 attaatttaaaatctcaatattatccttatagcaacatttattattatta 43871149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 86
Target Start/End: Original strand, 17153511 - 17153563
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    ||||| || |||||||| |||||||||||| | ||| ||||||||||||||||    
T  17153511 tatctttaaattaatttcaaatctcaatatcaaccttgtaacaacttttatta 17153563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34306130 - 34306184
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| |||||||||||||||||| ||||||| |||||||||||    
T  34306130 ttgtaacaacttttattattattaggttatattatacttgtaataacttttatta 34306184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 34306093 - 34306147
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||| || |||||| |||||||||||||||||| |||||||||||||||||||    
T  34306093 ttgtaataaattttattattattaggttatattatgcttgtaacaacttttatta 34306147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 43623321 - 43623285
Alignment:
Q  185 attattaggttatattatccttgtaacaacttttatt 221  Q
    |||||||||||||||||||||||||||||||||||||    
T  43623321 attattaggttatattatccttgtaacaacttttatt 43623285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 17306637 - 17306583
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| ||  ||||||||||||||| ||||||||||||||||||    
T  17306637 ttgtaacaatttttattatctttaggttatattatctttgtaacaacttttatta 17306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 34306028 - 34306077
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||| ||||||||||||||||||| | |||||||||||||||| |||||    
T  34306028 attaaattaaaatctcaatattatcgttgtaacaacttttattattatta 34306077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 43055351 - 43055400
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  43055351 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 43055400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 43637627 - 43637586
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  43637627 ttattattactaggttatattatccttgtaacaacttttatt 43637586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 50579634 - 50579683
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  50579634 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 50579683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 9398559 - 9398507
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    ||||| || ||||||||||||||||||||||| | | ||||||||||||||||    
T  9398559 tatctttaaattaatttaaaatctcaatattaacattgtaacaacttttatta 9398507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 222
Target Start/End: Complemental strand, 17306664 - 17306620
Alignment:
Q  178 ttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||||| ||||||||||||||||||||| ||||||||    
T  17306664 ttttttcattattaagttatattatccttgtaacaatttttatta 17306620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 221
Target Start/End: Original strand, 43995690 - 43995726
Alignment:
Q  185 attattaggttatattatccttgtaacaacttttatt 221  Q
    ||||||| |||||||||||||||||||||||||||||    
T  43995690 attattaagttatattatccttgtaacaacttttatt 43995726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 43 - 86
Target Start/End: Complemental strand, 52869481 - 52869438
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttatta 86  Q
    |||||||||||||||||||||||||||  ||||||| |||||||    
T  52869481 attaatttaaaatctcaatattatccttataacaacatttatta 52869438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 33113055 - 33112997
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttattaggtt 226  Q
    ||||||||  |||||| ||||||  |||||||| | |||||||||||||||||||||||    
T  33113055 ttgtaacattttttattattattttgttatatttttcttgtaacaacttttattaggtt 33112997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 43055377 - 43055430
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| |||||||| |||||||||  ||||||||| ||||||||    
T  43055377 ttgtaacaacttttattattattagattatattatttttgtaacaa-ttttatta 43055430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 25699768 - 25699817
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||  ||| |||||||||||||||| |||||    
T  25699768 attaatttcaaatctcaatatttaccttgtaacaacttttattattatta 25699817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 50579660 - 50579705
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  50579660 ttgtaacaacttttattattattagattatattatttttgtaacaa 50579705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 12110430 - 12110380
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||||    
T  12110430 attaatttaaaatcttaatgttatccttgtaacaacttttattactattaa 12110380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 14123749 - 14123790
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatt 221  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  14123749 ttattattattaggttatattatccttgtaacaacttttatt 14123790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 43748962 - 43749005
Alignment:
Q  179 tttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||    
T  43748962 tttattattattaggttatattatccttgaaacaacttttatta 43749005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 26758686 - 26758740
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||| |||||| ||||||||| | |||||||||||||||||||    
T  26758686 ttgtaacaatttttattattatttggttatatttttcttgtaacaacttttatta 26758740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2378452 - 2378403
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  2378452 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 2378403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 4599392 - 4599343
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  4599392 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 4599343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 12110404 - 12110337
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaactttt---attaggttatctat 232  Q
    |||||||||||||||| | |||||  |||||||||||||||||||| ||||   ||||||||||||||    
T  12110404 ttgtaacaacttttattactattaaattatattatccttgtaacaagttttatcattaggttatctat 12110337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 12391675 - 12391626
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  12391675 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 12391626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 26758551 - 26758600
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  26758551 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 26758600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30591379 - 30591428
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  30591379 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 30591428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 30887289 - 30887240
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  30887289 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 30887240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 34852541 - 34852590
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  34852541 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 34852590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 217
Target Start/End: Original strand, 11929331 - 11929363
Alignment:
Q  185 attattaggttatattatccttgtaacaacttt 217  Q
    |||||||||||||||||||||||||||||||||    
T  11929331 attattaggttatattatccttgtaacaacttt 11929363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 11941921 - 11941886
Alignment:
Q  185 attattaggttatattatccttgtaacaacttttat 220  Q
    |||||||| |||||||||||||||||||||||||||    
T  11941921 attattagattatattatccttgtaacaacttttat 11941886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Original strand, 11910313 - 11910347
Alignment:
Q  188 attaggttatattatccttgtaacaacttttatta 222  Q
    ||||| |||||||||||||||||||||||||||||    
T  11910313 attagattatattatccttgtaacaacttttatta 11910347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 202
Target Start/End: Original strand, 11910330 - 11910364
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattat 202  Q
    |||||||||||||||| ||||||||||||||||||    
T  11910330 ttgtaacaacttttattattattaggttatattat 11910364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 222
Target Start/End: Complemental strand, 11941341 - 11941307
Alignment:
Q  188 attaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||||||||||||||||||||||||||    
T  11941341 attatgttatattatccttgtaacaacttttatta 11941307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 34740791 - 34740737
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| |||||||||||||  |||| ||| || ||||||||||||||||||    
T  34740791 ttgtaacaatttttatcattattttgttacattttctttgtaacaacttttatta 34740737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 4599366 - 4599321
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  4599366 ttgtaacaacttttattattattagattatattatttttgtaacaa 4599321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 12391649 - 12391604
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  12391649 ttgtaacaacttttattattattagattatattatttttgtaacaa 12391604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 26758577 - 26758622
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  26758577 ttgtaacaacttttattattattagattatattatttttgtaacaa 26758622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 30591405 - 30591450
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  30591405 ttgtaacaacttttattattattagattatattatttttgtaacaa 30591450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 30887263 - 30887218
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  30887263 ttgtaacaacttttattattattagattatattatttttgtaacaa 30887218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 31960473 - 31960522
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  31960473 attaatttcaaatctcaatattaaccttataacaacttttattattatta 31960522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 34852567 - 34852612
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  34852567 ttgtaacaacttttattattattagattatattatttttgtaacaa 34852612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 45264086 - 45264037
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||| | |  ||||||||||||||| |||||    
T  45264086 attaatttaaaatctcaatattaactttataacaacttttattattatta 45264037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 85
Target Start/End: Complemental strand, 12505297 - 12505261
Alignment:
Q  49 ttaaaatctcaatattatcctcgtaacaacttttatt 85  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  12505297 ttaaaatctcaatattatccttgtaacaacttctatt 12505261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 17508706 - 17508653
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||||||||    
T  17508706 ttgtaacaacttt-attattattaggttatattatctttgtaacaacttttatta 17508653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 13504617 - 13504670
Alignment:
Q  169 tgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||| |||||  ||||||||||||||||||| ||||||||||||||||||    
T  13504617 tgtaacaaattttaatattattaggttatattatcattgtaacaacttttatta 13504670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 13507452 - 13507494
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| |||||||||||||||||||||| |||||||||||||||    
T  13507452 ttattattattaggttatattatccttctaacaacttttatta 13507494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 17508670 - 17508616
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| |||| ||| |||| | ||||||||||||||||||||||    
T  17508670 ttgtaacaacttttattattagtagtttatgtcatccttgtaacaacttttatta 17508616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 2523815 - 2523864
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  2523815 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 2523864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 10838948 - 10838997
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  10838948 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 10838997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 25087278 - 25087229
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  25087278 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 25087229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 25510646 - 25510597
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  25510646 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 25510597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 30592586 - 30592635
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  30592586 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 30592635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 7807324 - 7807374
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    |||||||| |||||||| ||||| ||| |||||||||||||||| ||||||    
T  7807324 attaattttaaatctcagtattaaccttgtaacaacttttattattattaa 7807374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 25510544 - 25510490
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||| | |||| ||||||  |||||||| |||||||||||||||||||||    
T  25510544 ttgtaacaattattattattattttgttatattttccttgtaacaacttttatta 25510490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 2523841 - 2523886
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  2523841 ttgtaacaacttttattattattagattatattatttttgtaacaa 2523886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 25087252 - 25087207
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  25087252 ttgtaacaacttttattattattagattatattatttttgtaacaa 25087207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 25510620 - 25510575
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  25510620 ttgtaacaacttttattattattagattatattatttttgtaacaa 25510575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 26047056 - 26047007
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||| ||| |||||    
T  26047056 attaatttcaaatctcaatattaaccttgtaacaactttttttattatta 26047007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 34783791 - 34783742
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||| ||||||||||| |||||    
T  34783791 attaatttcaaatctcaatattaaccttgtaataacttttattattatta 34783742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Complemental strand, 19183920 - 19183878
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  19183920 ttattattattaggttatattatccttgtaacaacttttatta 19183878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 19914703 - 19914757
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| |||| | ||||||||| |||||||||||||||||||||    
T  19914703 ttgtaacaacttttattattagttggttatattgtccttgtaacaacttttatta 19914757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 222
Target Start/End: Original strand, 27551631 - 27551673
Alignment:
Q  180 ttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  27551631 ttattattattaggttatattatccttgtaacaacttttatta 27551673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 30548475 - 30548421
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| ||||||| ||||||||||  ||||||||||||||||||    
T  30548475 ttgtaacaacttttattattattaagttatattatttttgtaacaacttttatta 30548421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 35234098 - 35234045
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  35234098 ttgtaacaacttttattattattaggttatattat-tttgtaacaacttttatta 35234045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Original strand, 1757170 - 1757225
Alignment:
Q  168 ttgtaacaacttttatcattattaggtta-tattatccttgtaacaacttttatta 222  Q
    |||||||||| ||||| |||||||||||| ||||||| ||||||||||||||||||    
T  1757170 ttgtaacaacatttattattattaggttagtattatctttgtaacaacttttatta 1757225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 1757144 - 1757193
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||||| | |||||||| ||||||| |||||    
T  1757144 attaatttaaaatctcaatattatctttgtaacaacatttattattatta 1757193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 20254841 - 20254792
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  20254841 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 20254792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 26496703 - 26496752
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  26496703 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 26496752  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 27551560 - 27551609
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  27551560 attaatttaaaatctcaatattatccttataataacttttattattatta 27551609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Original strand, 34150715 - 34150764
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  34150715 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 34150764  T

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Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 35234171 - 35234122
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    ||||||||||||||||||||||||| | |||||||| ||||||| |||||    
T  35234171 attaatttaaaatctcaatattatctttgtaacaacatttattattatta 35234122  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 36668295 - 36668246
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  36668295 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 36668246  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 49318648 - 49318599
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  49318648 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 49318599  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 179 - 222
Target Start/End: Original strand, 3075246 - 3075289
Alignment:
Q  179 tttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||    
T  3075246 tttattattattaggttatatcatcattgtaacaacttttatta 3075289  T

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Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 30548510 - 30548451
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttattactattaa 93  Q
    ||||| || ||||||||||||| ||||||| | ||| |||||||||||||||| ||||||    
T  30548510 tatctatagattaatttaaaatttcaatatgaaccttgtaacaacttttattattattaa 30548451  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 3151046 - 3151001
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  3151046 ttgtaacaacttttattattattagattatattatttttgtaacaa 3151001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 3151072 - 3151023
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| ||||||||||||||  || |||||||||||||||| |||||    
T  3151072 attaatttcaaatctcaatattagtcttgtaacaacttttattattatta 3151023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Complemental strand, 16335537 - 16335484
Alignment:
Q  169 tgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||| |||||| ||||||  |||||||| | |||||||||||||||||||    
T  16335537 tgtaacaatttttattattattttgttatatttttcttgtaacaacttttatta 16335484  T

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Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 21232926 - 21232877
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| |||  ||||||||||||||| |||||    
T  21232926 attaatttcaaatctcaatattaaccttttaacaacttttattattatta 21232877  T

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Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 26496729 - 26496774
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  26496729 ttgtaacaacttttattattattagattatattatttttgtaacaa 26496774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Original strand, 34150741 - 34150786
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  34150741 ttgtaacaacttttattattattagattatattatttttgtaacaa 34150786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 36668269 - 36668224
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  36668269 ttgtaacaacttttattattattagattatattatttttgtaacaa 36668224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 49318622 - 49318577
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  49318622 ttgtaacaacttttattattattagattatattatttttgtaacaa 49318577  T

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Target: scaffold0365 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 1117 - 1068
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  1117 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 1068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 213
Target Start/End: Complemental strand, 1091 - 1046
Alignment:
Q  168 ttgtaacaacttttatcattattaggttatattatccttgtaacaa 213  Q
    |||||||||||||||| |||||||| |||||||||  |||||||||    
T  1091 ttgtaacaacttttattattattagattatattatttttgtaacaa 1046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 41482 - 41445
Alignment:
Q  185 attattaggttatattatccttgtaacaacttttatta 222  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  41482 attattaggttatattatccttgaaacaacttttatta 41445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 95376 - 95327
Alignment:
Q  43 attaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||||||| |||||||||||||| ||| |||||||||||||||| |||||    
T  95376 attaatttcaaatctcaatattaaccttgtaacaacttttattattatta 95327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 5764 - 5822
Alignment:
Q  34 tatctctacattaatttaaaatctcaatattatcctcgtaacaacttttattactatta 92  Q
    |||| ||| |||||||||||||||||||| ||||||  ||||||  |||||||||||||    
T  5764 tatccctagattaatttaaaatctcaataatatccttataacaagatttattactatta 5822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 222
Target Start/End: Original strand, 57323 - 57376
Alignment:
Q  169 tgtaacaacttttatcattattaggttatattatccttgtaacaacttttatta 222  Q
    |||||||| |||||| ||||||  |||||||| | |||||||||||||||||||    
T  57323 tgtaacaatttttattattattttgttatatttttcttgtaacaacttttatta 57376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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