View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0607_low_3 (Length: 480)

Name: NF0607_low_3
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0607_low_3
NF0607_low_3
[»] chr4 (3 HSPs)
chr4 (52-452)||(7171293-7171702)
chr4 (6-452)||(7169848-7170290)
chr4 (18-121)||(8321513-8321616)
[»] chr2 (1 HSPs)
chr2 (32-202)||(19993810-19993980)
[»] scaffold0021 (1 HSPs)
scaffold0021 (10-120)||(156520-156630)
[»] chr1 (10 HSPs)
chr1 (37-202)||(25427571-25427736)
chr1 (10-183)||(17621964-17622137)
chr1 (25-149)||(26645949-26646072)
chr1 (9-121)||(11993788-11993899)
chr1 (222-320)||(13091047-13091144)
chr1 (290-340)||(26645739-26645789)
chr1 (302-340)||(10916667-10916705)
chr1 (18-63)||(35395198-35395244)
chr1 (68-117)||(26330497-26330545)
chr1 (50-94)||(15984102-15984146)
[»] chr8 (4 HSPs)
chr8 (243-336)||(11434086-11434179)
chr8 (10-149)||(260596-260735)
chr8 (10-149)||(655186-655325)
chr8 (10-149)||(840921-841060)
[»] chr7 (3 HSPs)
chr7 (52-150)||(15963195-15963293)
chr7 (100-166)||(11728478-11728544)
chr7 (290-338)||(27223231-27223279)
[»] chr5 (1 HSPs)
chr5 (10-183)||(33699789-33699962)


Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 52 - 452
Target Start/End: Original strand, 7171293 - 7171702
Alignment:
52 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaaca 151  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
7171293 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatattcgaaaggggattactgaagctttacaaca 7171392  T
152 aattacacaattgttattgtgattttgatctttgcaaagaattaattagatttcagagtgacctctctatgttccaaccgattacactaaagtgaatcta 251  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
7171393 aattacacaattgttattgtgattttgatctttgcaaagaattaattagatttcagagtgacctctctatgttccaaccgatcacactaaagtgaatcta 7171492  T
252 aacatttatttttctaagtttattatgatcacagacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataat---------ag 342  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
7171493 aacatttatttttctaagtttattatgatcacaaacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataatggaggcttgag 7171592  T
343 tgtatttgtgtttgcaatccaatgttagagaatatatttggatatttttcaaaacaatttgatcttttctacttctgatattcttcgagatgcagaaatt 442  Q
     |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||  |||||||||||||    
7171593 cgtatttgtgtttgcaatctaatgttagtgaatatatttggatatttttcaaaacaatttgatcttttctacttctgatcttttttcagatgcagaaatt 7171692  T
443 cttgacataa 452  Q
    ||||||||||    
7171693 cttgacataa 7171702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 6 - 452
Target Start/End: Original strand, 7169848 - 7170290
Alignment:
6 tgtttgagatagcctctcggattttgcacactttctcttctttttggtctacttgaccatata----agttttgcacatcctcttcagactttaatcgac 101  Q
    ||||||||||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||    ||| |||  ||||| ||||||||||||||||||    
7169848 tgtttgagataccctctcgaattttgcaaactttctcttctttttggtctacttgaccatatatataagtattgggcatccccttcagactttaatcgac 7169947  T
102 cacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgttattgtgattttgatctttgcaaagaattaattaga 201  Q
    |||||||||||||||||||| | |||  ||||||| |||||||||||||||||||||||||||||||||||||||||||               || |||    
7169948 cacacaatccacctttataccctaaataggattaccgaagctttacaacaaattacacaattgttattgtgattttgat---------------ataaga 7170032  T
202 tttcagagtgacctctctatgttccaaccgattacactaaagtgaatctaaacatttatttttctaagtttattatgatcacagacatgtgaatatgaac 301  Q
    | | |  |||||||||||| |||| ||| |||  |||||||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||||    
7170033 tcttatggtgacctctctaggttcaaactgatcgcactaaagtgaatctaaacatttatttttctaagtttcatatgatcacacacatgtaaatatgaac 7170132  T
302 ttttcaaatacactataaaatatgtcccaaagatataat---------agtgtatttgtgtttgcaatccaatgttagagaatatatttggatatttttc 392  Q
    ||||||||||||||||| || |||| ||| |||||||||         |||||||||||| |||||||| |||||| |||||||||||||||| |||||     
7170133 ttttcaaatacactatagaagatgttccagagatataatggaggcttgagtgtatttgtgcttgcaatctaatgtttgagaatatatttggatcttttt- 7170231  T
393 aaaacaatttgatcttttctacttctgatattcttcgagatgcagaaattcttgacataa 452  Q
     ||||||| ||||||||||||||| |||| || || ||||| || |||||||||||||||    
7170232 taaacaatctgatcttttctacttttgatctt-tttgagatacataaattcttgacataa 7170290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 8321513 - 8321616
Alignment:
18 cctctcggattttgcacactttctcttc-tttttggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctt 116  Q
    |||||| ||| ||||||||||||||||| ||| |||||| ||||||| || |||||||| ||| |||||| ||||||| | | | || ||||||||||||    
8321513 cctctcagatgttgcacactttctcttcatttctggtctccttgaccttacaagttttggacaacctctttagacttt-agctatcatacaatccacctt 8321611  T
117 tatac 121  Q
    |||||    
8321612 tatac 8321616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 19993810 - 19993980
Alignment:
32 cacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggg 130  Q
    |||||||||||||||||| |||||||| | || ||| ||| |||  ||| |||||||||| ||||  | ||||||||||||||||| |||| | |||| |    
19993810 cacactttctcttcttttctggtctacctaacaatacaagatttagacaacctcttcagattttag-ctaccacacaatccaccttaataccctaaagag 19993908  T
131 gattactgaagctttacaacaaattacacaattgttattgtgattttgatctttgcaaagaattaattagat 202  Q
    ||||| |||||||||||| |  |||| ||||||||| ||||||| |||||||||  ||||||| ||||||||    
19993909 gattagtgaagctttacatcttattatacaattgttcttgtgatcttgatctttaaaaagaatcaattagat 19993980  T

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Target: scaffold0021 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 10 - 120
Target Start/End: Complemental strand, 156630 - 156520
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||| || | ||||| |||||||||||||| |||||||||| ||||||||||||||| ||| ||| |||||||||||| | |||| ||||    
156630 tgagataccctctcagaatctgcac-ctttctcttcttttctggtctacttaaccatataagttttggacagcctattcagactttaagctaccatacaa 156532  T
109 tccacctttata 120  Q
    || |||||||||    
156531 tcaacctttata 156520  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 25427571 - 25427736
Alignment:
37 tttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggatta 135  Q
    ||||||||||||| |||||||| ||||||||  | ||||  |||  |||||| |||||||| | |||||||||||| ||||||||  | |||| ||| ||    
25427571 tttctcttcttttctggtctacctgaccatactatttttagacagtctcttcggactttaagctaccacacaatcctcctttataacc-aaagaggaata 25427669  T
136 ctgaagctttacaacaaattacacaattgttattgtgattttgatctttgcaaagaattaattagat 202  Q
     |||||||||||||   |||||| || |||||||||||| ||||| ||| |||||||| ||||||||    
25427670 atgaagctttacaattgattacataaatgttattgtgatcttgatttttacaaagaatcaattagat 25427736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 183
Target Start/End: Complemental strand, 17622137 - 17621964
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||  |||||| ||||||||||| || ||| | |||||||| |||||| ||||||||  || ||| ||| ||||||| |  |||||||||    
17622137 tgagataccctcttagattttacacactttctcgtcatttctagtctactttaccatacaagttttgagcagccttttcggactttagtt-accacacaa 17622039  T
109 tccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgttattgtgattttgatctt 183  Q
    ||||||||||||    |||| |||||  |||||||||||||    ||||||||||||| ||||||||| ||||||    
17622038 tccacctttatagcataaagaggattggtgaagctttacaaatgcttacacaattgttcttgtgatttcgatctt 17621964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 25 - 149
Target Start/End: Complemental strand, 26646072 - 26645949
Alignment:
25 gattttgcacactttctcttctttttggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttat-actc 123  Q
    |||| ||||||| || ||||| || |||| |||||| ||||| |||||||  |||| ||||||||||||||| | |||||||||||||||||||| ||||    
26646072 gattctgcacacattatcttcattctggtttacttggccatacaagttttagacatgctcttcagactttaa-ctaccacacaatccacctttataactc 26645974  T
124 gaaaggggattactgaagctttacaa 149  Q
     ||||  ||||| |||||||||||||    
26645973 -aaagaagattagtgaagctttacaa 26645949  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 11993899 - 11993788
Alignment:
9 ttgagatagcctctcggattttgcacactttctcttctttttggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    |||||||| |||||| ||||  | ||||||||||||||||||||||||  ||||| || |||||||| |||  |||||||  |||||| | |||||||||    
11993899 ttgagataccctctcagattccgaacactttctcttctttttggtctatctgaccttacaagttttggacaggctcttcaatctttaa-ctaccacacaa 11993801  T
109 tccacctttatac 121  Q
    || ||||||||||    
11993800 tctacctttatac 11993788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 320
Target Start/End: Complemental strand, 13091144 - 13091047
Alignment:
222 gttccaaccgattacactaaagtgaatctaaacatttatttttctaagtttattatgatcacagacatgtgaatatgaacttttcaaatacactataaa 320  Q
    |||| ||||||||||||||  ||||||| |||| ||| ||| |||||||| | | |||||||| ||||||||||||||| |||||||||  ||||||||    
13091144 gttcaaaccgattacactag-gtgaatccaaacttttgtttctctaagttcaatctgatcacacacatgtgaatatgaaattttcaaatgtactataaa 13091047  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 290 - 340
Target Start/End: Complemental strand, 26645789 - 26645739
Alignment:
290 gtgaatatgaacttttcaaatacactataaaatatgtcccaaagatataat 340  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| ||||    
26645789 gtgaatatgaacttttcaaatacactataaaagatgttccaaagatgtaat 26645739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 340
Target Start/End: Complemental strand, 10916705 - 10916667
Alignment:
302 ttttcaaatacactataaaatatgtcccaaagatataat 340  Q
    |||||||||||||||||||| |||| |||||||||||||    
10916705 ttttcaaatacactataaaagatgttccaaagatataat 10916667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 35395198 - 35395244
Alignment:
18 cctctcggattttgcacactttctcttc-tttttggtctacttgacc 63  Q
    ||||||||||  |||||||||||||||| ||||||||||||||||||    
35395198 cctctcggatggtgcacactttctcttcatttttggtctacttgacc 35395244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 117
Target Start/End: Original strand, 26330497 - 26330545
Alignment:
68 aagttttgcacatcctcttcagactttaatcgaccacacaatccaccttt 117  Q
    |||||||| ||| |||||||||||||||| | ||||||||||||||||||    
26330497 aagttttggacaacctcttcagactttaa-caaccacacaatccaccttt 26330545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Original strand, 15984102 - 15984146
Alignment:
50 tggtctacttgaccatataagttttgcacatcctcttcagacttt 94  Q
    ||||||||| |||| || |||||||||||||||||| ||||||||    
15984102 tggtctactcgaccttacaagttttgcacatcctctccagacttt 15984146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 336
Target Start/End: Complemental strand, 11434179 - 11434086
Alignment:
243 gtgaatctaaacatttatttttctaagtttattatgatcacagacatgtgaatatgaacttttcaaatacactataaaatatgtcccaaagata 336  Q
    |||||||| ||| ||| ||| | |||||| | | |||||||| ||| |||||| |||||||||||||||||||||||||||| | |||||||||    
11434179 gtgaatctgaacttttgtttatataagttcaatctgatcacacacaagtgaatttgaacttttcaaatacactataaaatatattccaaagata 11434086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 260735 - 260596
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | |||||| ||||||  | |||||| ||    
260735 tgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatcttcatactttag-ctaccacataa 260637  T
109 tccacctttatactcgaaaggggattactgaagctttacaa 149  Q
    |||||||||||||   |||| | |||| |||||||||||||    
260636 tccacctttataccataaagagaattagtgaagctttacaa 260596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 655186 - 655325
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | |||||| ||||||  | |||||| ||    
655186 tgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatcttcatactttag-ctaccacataa 655284  T
109 tccacctttatactcgaaaggggattactgaagctttacaa 149  Q
    |||||||||||||   |||| | |||| |||||||||||||    
655285 tccacctttataccataaagagaattagtgaagctttacaa 655325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 840921 - 841060
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||| |||| | |||| ||||||||||||| |||||||| | ||| || ||||||  |||  | |||||| ||||||  | |||||| ||    
840921 tgagataccctctcagattcttcacattttctcttcttttatggtctacctaaccttacaagtttaacactacatcttcatactttag-ctaccacataa 841019  T
109 tccacctttatactcgaaaggggattactgaagctttacaa 149  Q
    |||||||||||||   |||| | |||| |||||||||||||    
841020 tccacctttataccataaagagaattagtgaagctttacaa 841060  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 15963195 - 15963293
Alignment:
52 gtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaatccacctttatactcgaaaggggattactgaagctttacaac 150  Q
    |||||| ||||||||||||||||| ||| |||||||||| ||  | | ||||||||||||| |||||||| | |||  |||||| |||||| |||||||    
15963195 gtctacctgaccatataagttttggacagcctcttcagatttggagctaccacacaatccatctttataccctaaaaaggattagtgaagccttacaac 15963293  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 11728478 - 11728544
Alignment:
100 accacacaatccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgtt 166  Q
    |||||||||||||||||||||  | |||| |||||| ||||||||||||||   |||||||||||||    
11728478 accacacaatccacctttatatcctaaagaggattaatgaagctttacaactgtttacacaattgtt 11728544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 290 - 338
Target Start/End: Complemental strand, 27223279 - 27223231
Alignment:
290 gtgaatatgaacttttcaaatacactataaaatatgtcccaaagatata 338  Q
    |||||| ||||||||||||||||| | ||||||||||  ||||||||||    
27223279 gtgaatttgaacttttcaaatacattgtaaaatatgtgtcaaagatata 27223231  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 183
Target Start/End: Original strand, 33699789 - 33699962
Alignment:
10 tgagatagcctctcggattttgcacactttctcttctttt-tggtctacttgaccatataagttttgcacatcctcttcagactttaatcgaccacacaa 108  Q
    ||||||| |||||| |||| ||||||||||||||| |||| | |||||    ||| || || |||||  || |||||||||||||||   | | ||||||    
33699789 tgagataccctctcagattctgcacactttctcttattttctagtctaaccaaccttacaaattttgggcagcctcttcagactttagctg-ctacacaa 33699887  T
109 tccacctttatactcgaaaggggattactgaagctttacaacaaattacacaattgttattgtgattttgatctt 183  Q
    ||||||||||||| | |||| |||||| |||||||||||||   || || |||||||| ||||||| ||||||||    
33699888 tccacctttataccctaaagaggattagtgaagctttacaattgatgactcaattgttcttgtgatcttgatctt 33699962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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