View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0607_low_4 (Length: 423)
Name: NF0607_low_4
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0607_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 13 - 394
Target Start/End: Original strand, 48845384 - 48845767
Alignment:
| Q |
13 |
aatatatcattgaaatcatatgcatgtaaccggacagcctccatcttgcaaactagtacccggatatatatgaggttgtatttaaatgttaattattgaa |
112 |
Q |
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| T |
48845384 |
aatatatcattgaaatcatatgcatgtaaccggacagcctccatcttgcaacctagtacccggatatatatgaggttgtatttaaatgttaattattgaa |
48845483 |
T |
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| Q |
113 |
ttaacggnnnnnnnaatgattattagaaactca--gacagtatgcacgttgttattgtcaatcatgatattttgaagagtactacaccattcttattcca |
210 |
Q |
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| T |
48845484 |
ttaacggtttttttaatgattatcagaaactcatagagagtatgcacgttgttattgtcaatcatgatattttgaagagtactacaccattcttattcca |
48845583 |
T |
|
| Q |
211 |
tttaagcaagactattgattaaattagcttcaatattagcaaattaatccccaagttttgctaggttcagtgcactatgattaattgtttacaacaaaac |
310 |
Q |
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| T |
48845584 |
tttaagcaagactattgattaaattagcttcaatattagcaaattaatccccaagttttgctaggttcagggcactatgattaattgtttacaacaaaac |
48845683 |
T |
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| Q |
311 |
acaaaatcaatatatacataactggaagattaaataaagttctcatatggatcacaaagtaaaacgataattcattgcattaat |
394 |
Q |
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| T |
48845684 |
acaaaatcaatatatacataactggaagattaaataaagttctcatatggatcacaaagtaaaacgataattcattgcattaat |
48845767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 127 - 394
Target Start/End: Complemental strand, 7017047 - 7016782
Alignment:
| Q |
127 |
aatgattattagaaactca--gacagtatgcacgttgttattgtcaatcatgatattttgaagagtactacaccattcttattccatttaagcaagacta |
224 |
Q |
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| T |
7017047 |
aatgattattagaaactcatagatagtatgcacgttgttattgtcaattatgatattttgaagagtactacatcattcttattccatttaagcaagacga |
7016948 |
T |
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| Q |
225 |
ttgattaaattagcttcaatattagcaaattaatccccaagttttgctaggttcagtgcactatgattaattgtttacaacaaaacacaaaatcaatata |
324 |
Q |
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| T |
7016947 |
ttgattaaattagcttcaatatcagcaaattaatccccaagttttgctaggttc--tgcactatgattaattgtttacagcaaaacacaaaatcaatata |
7016850 |
T |
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| Q |
325 |
tacataactggaagattaaataaagttctcatatggatcacaaagtaaaacgataattcattgcattaat |
394 |
Q |
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| T |
7016849 |
tacataactggaagattaaataaagttctcatatggatcacaaagtaaaacgataat--attgcattaat |
7016782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 7017455 - 7017356
Alignment:
| Q |
15 |
tatatcattgaaatcatatgcatgtaa-ccggacagcctccatcttgcaaactagtacccggatatatatgaggttgtatttaaatgttaattattgaat |
113 |
Q |
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| T |
7017455 |
tatatcattgaaatcatatgcatgtaaaccggacagcctccatcttgcaacctagtacccagatatatatgaggttgtatttaaatgttaattattgaat |
7017356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 169 - 394
Target Start/End: Original strand, 42994885 - 42995106
Alignment:
| Q |
169 |
caatcatgatattttgaagagtactacaccattcttattccatttaagcaagactattgattaaattagcttcaatattagcaaattaatccccaagttt |
268 |
Q |
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|||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
42994885 |
caatcatgatattttgaagagtaccacgccattcttattccatttaagcaagactattgattaaattagcttcaatatcaacaaatt----cccaagttt |
42994980 |
T |
|
| Q |
269 |
tgctaggttcagtgcactatgattaattgtttacaacaaaacacaaaatcaatatatacataactggaagattaaataaagttctcatatggatcacaaa |
368 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||| |||||| ||||||||||||||||| | || |
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| T |
42994981 |
tgctaggttcagtgcactatgattaattctttacaacaaaatacaaaatcaatatacacataactggaaaattaaagaaagttctcatatggattataag |
42995080 |
T |
|
| Q |
369 |
gtaaaacgataattcattgcattaat |
394 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
42995081 |
gtaaaacgaaaattcattgcattaat |
42995106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 261 - 394
Target Start/End: Original strand, 17725177 - 17725310
Alignment:
| Q |
261 |
ccaagttttgctaggttcagtgcactatgattaattgtttacaacaaaacacaaaatcaatatatacataactggaagattaaataaagttctcatatgg |
360 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
17725177 |
ccaagttttgccaggttcagtgcactatgattaattgtttacagcaaaacataaaatcaatatatacataactggaagattaaagaaagttatcatatgg |
17725276 |
T |
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| Q |
361 |
atcacaaagtaaaacgataattcattgcattaat |
394 |
Q |
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|||| || |||||||||||||||||||||||||| |
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| T |
17725277 |
atcataaggtaaaacgataattcattgcattaat |
17725310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 17725118 - 17725179
Alignment:
| Q |
149 |
agtatgcacgttgttattgtcaatcatgatattttgaagagtactacaccattcttattcca |
210 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| |
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| T |
17725118 |
agtatgcacactgttattgtcaattatgatattttgaagagtactacgccattcttattcca |
17725179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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