View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0607_low_8 (Length: 349)
Name: NF0607_low_8
Description: NF0607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0607_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17478649 - 17478435
Alignment:
| Q |
1 |
aagattagccatgtacaatttccacgagaagactgccctcgttgaagtattttccaaggtatgtgatcacagtatggtactccctccattccaaaatatg |
100 |
Q |
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| T |
17478649 |
aagattagccatgcacaatttccacgagaagactgccctcgttgaagtattttccaaggtatttgatcacaggatggtactccctccatttcaaaatatg |
17478550 |
T |
|
| Q |
101 |
gtgtttttagaatttttgtcctaggtaatatatatcagtttatcaattccttttcaggtatacnnnnnnntgtcaaagcacaacaaacaagtgcaggcag |
200 |
Q |
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| T |
17478549 |
gtgtttttagaatttttgtcctaggtaatatatatcagtttatcaattccttttcaggtatacaaaaaaatgtcaaagcacaacaaacaagt----gcag |
17478454 |
T |
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| Q |
201 |
gctatgcaagaacaggtat |
219 |
Q |
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||||||||||||||||||| |
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| T |
17478453 |
gctatgcaagaacaggtat |
17478435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 276 - 339
Target Start/End: Complemental strand, 17477960 - 17477897
Alignment:
| Q |
276 |
tataatcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagcta |
339 |
Q |
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| T |
17477960 |
tataatcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaacagcta |
17477897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 5 - 116
Target Start/End: Complemental strand, 36890406 - 36890295
Alignment:
| Q |
5 |
ttagccatgtacaatttccacgagaagactgccctcgttgaagtattttccaaggtatgtgatcacagtatggtactccctccattccaaaatatggtgt |
104 |
Q |
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| T |
36890406 |
ttagtcatgcacaatttccacaagaagactgcccttgttgaagtttatgccaaggtatgttgtcaccggatatgactccctccattccaaaatatggtgt |
36890307 |
T |
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| Q |
105 |
ttttagaatttt |
116 |
Q |
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| T |
36890306 |
ttttagaatttt |
36890295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 36905669 - 36905781
Alignment:
| Q |
1 |
aagattagccatgtacaatttccacgagaagactgccctcgttgaagtattttccaaggtatgtgatcacagtatggtactccctccattccaaaatatg |
100 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||| ||| || | |||| ||||||||| | | | |||| |
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| T |
36905669 |
aagattagccatgcacaatttccatgagaagactgcccttgttgaagttatttccaaggtatgttgtcataggacggtattccctccatacaatactatg |
36905768 |
T |
|
| Q |
101 |
gtgtttttagaat |
113 |
Q |
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||||||||||||| |
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| T |
36905769 |
gtgtttttagaat |
36905781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 246 - 335
Target Start/End: Complemental strand, 36888958 - 36888867
Alignment:
| Q |
246 |
tttgatgagagaataaattgttatttagtgtata--atcgacaggtggatgccgcaaatagtagaattacctcagaaaaagaatctgcaaca |
335 |
Q |
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|||||||| ||||||||||||||||| ||| || || ||||||||||||| | ||||||||||||||||| | |||||||||||||||| |
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| T |
36888958 |
tttgatgaaagaataaattgttattttttgtttacaattgacaggtggatgcggtaaatagtagaattaccttggcaaaagaatctgcaaca |
36888867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 36889876 - 36889827
Alignment:
| Q |
114 |
ttttgtcctaggtaatatatatcagtttatcaattccttttcaggtatac |
163 |
Q |
| |
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||||||| ||| ||||||| |||| |||||||| |||||||||||||||| |
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| T |
36889876 |
ttttgtcatagataatatagatcactttatcaaatccttttcaggtatac |
36889827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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