View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_high_1 (Length: 692)
Name: NF0608_high_1
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 29 - 547
Target Start/End: Complemental strand, 3951412 - 3950893
Alignment:
| Q |
29 |
agttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951412 |
agttttcaagtcccaattcttgactttaaggaacaaaatgagtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
3951313 |
T |
|
| Q |
129 |
aaagtgtgcaggacattgtatatatggaag---gtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaactgaaaacta |
225 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3951312 |
aaagtgtgcaggacattatatatatggaagaaggtcacaaaaaagtttttgtcttactttaaagctctaacaatatctacaaatatagaactgaaaacta |
3951213 |
T |
|
| Q |
226 |
taattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtt |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3951212 |
taattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtt |
3951113 |
T |
|
| Q |
326 |
tgagagtctccagaagacaaatatgccattggattggaacaagtgcactatgaacaatctttctttgtctctagaaccttgaacgtcacaataagggaaa |
425 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
3951112 |
tgagaggctccagaaggcaaatatgccattggattggaacaagtgcactacgaacaatctttc--tgtctctagaaccttgaacgtcacaataagggaaa |
3951015 |
T |
|
| Q |
426 |
cacaagattattaacggaacgaaacagnnnnnnnnnnnnnnnnnntatcacaagaaattaaattaatggtcatagcaataagaaagcaatttctgacctt |
525 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3951014 |
cacaaggttattaacggaacgaaacagaaaaaaatgaaaagaaaatatcacaaaaaattaaattaacggtcatagcaataagaaagcaatttctgacctt |
3950915 |
T |
|
| Q |
526 |
caatgctttggctgctagagat |
547 |
Q |
| |
|
||||| |||||||||||||||| |
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|
| T |
3950914 |
caatgttttggctgctagagat |
3950893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 31 - 449
Target Start/End: Original strand, 4027464 - 4027886
Alignment:
| Q |
31 |
ttttcaagtcccaattcttgactttaaggaacaaaatga--gtttactctaatttctgcagagtaaatttttagtattattatacaacggtttctgcata |
128 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |||| ||||||| |||||| | ||| | |||||| |||||||||| | ||||| |||| |
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| T |
4027464 |
ttttcaagtcccaattcttgacattaaggaccaaaatgatagtttgctctaatatctgcaaattaa-tatttagttctattatacaatgatttctacata |
4027562 |
T |
|
| Q |
129 |
aaagtgtgcaggacattgtatatatggaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact--------gaa |
220 |
Q |
| |
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| ||||||||||||| | ||||| ||||||||||||||| ||||| ||||||||| ||||||| |||||||||||||||||||| || || |
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|
| T |
4027563 |
a--gtgtgcaggacatagaatataaggaaggtcacaaaaaggttttggtcttacttcacagctcatacaatatctacaaatatagagctaagaagtaaaa |
4027660 |
T |
|
| Q |
221 |
aactataattacatactgtctcgttgataaatcgaaaattttcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatata |
320 |
Q |
| |
|
||| || |||||||||||| || |||| ||||| ||| |||||| || ||||| ||| |||||||| ||| || ||||||||| |||||||||| | |
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|
| T |
4027661 |
aaccatgattacatactgtttcattgaaaaatcttaaagtttcaggatcaattcgtaa-cacaaattcgaatttaataagcaga--cattacagcataaa |
4027757 |
T |
|
| Q |
321 |
ttgtttgagagtctccagaagacaaatatgccattggattggaacaagtgcactatgaacaatctttctttgtctctagaaccttgaacgtcacaataag |
420 |
Q |
| |
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|| ||||||| ||| ||| ||||||| ||||||| |||||||||| |||||| ||||| ||||||||| |||||||| |||| ||| | |||||||| |
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| T |
4027758 |
ttatttgagaagctctggaaaacaaatacgccattgaattggaacaaatgcactctgaacgatctttcttcgtctctaggacctcgaaaattacaataag |
4027857 |
T |
|
| Q |
421 |
ggaaacacaagattattaacggaacgaaa |
449 |
Q |
| |
|
|||||||||||| ||||| |||||||||| |
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|
| T |
4027858 |
ggaaacacaagaatattaccggaacgaaa |
4027886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 262 - 438
Target Start/End: Original strand, 4005234 - 4005409
Alignment:
| Q |
262 |
tcagcattaattcataaccacaaatttgaaattgataagcagagtatttacagcatatattgtttgagagtctccagaagacaaatatgccattggattg |
361 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| || |||| ||||| | |||||||||||||| |||||| ||||||||| ||||||||||||| | || |
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|
| T |
4005234 |
tcagcattaattcataac-acaaattcgaatttaataaacagagcaattacagcatatattagttgagaagttccagaagataaatatgccattgaactg |
4005332 |
T |
|
| Q |
362 |
gaacaagtgcactatgaacaatctttctttgtctctagaaccttgaacgtcacaataagggaaacacaagattatta |
438 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||| |
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|
| T |
4005333 |
gaacaagtgcactctgaacaatctttcttcgtctctagaaccttgaataacgcaataagggaaacacaaggttatta |
4005409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 281 - 436
Target Start/End: Original strand, 4013500 - 4013653
Alignment:
| Q |
281 |
acaaatttgaaattgataagcagagtatttacagcatatattgtttgagagtctccagaagacaaatatgccattggattggaacaagtgcactatgaac |
380 |
Q |
| |
|
||||||| ||||| |||||||||| |||||||||||||| ||||||| |||| ||||||||||| ||||||| |||||||||| | ||| |||| |
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|
| T |
4013500 |
acaaattcgaaatcaataagcagaga--ttacagcatatattatttgagaagctccggaagacaaatacgccattgaattggaacaatttcacacggaac |
4013597 |
T |
|
| Q |
381 |
aatctttctttgtctctagaaccttgaacgtcacaataagggaaacacaagattat |
436 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
4013598 |
aatctttcttcgtctctagaaccttgaacatcacaataagggaaacacaagattat |
4013653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 280 - 379
Target Start/End: Original strand, 4215801 - 4215900
Alignment:
| Q |
280 |
cacaaatttgaaattgataagcagagtatttacagcatatattgtttgagagtctccagaagacaaatatgccattggattggaacaagtgcactatgaa |
379 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||| |||||| |||||||||||||| |||||| |
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|
| T |
4215801 |
cacaaattagaaattgataatcagagtatttacagcagatattgtttgagaggctccagaagacaaatatgacattggtttggaacaagtgcagtatgaa |
4215900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 333 - 438
Target Start/End: Original strand, 3991243 - 3991348
Alignment:
| Q |
333 |
ctccagaagacaaatatgccattggattggaacaagtgcactatgaacaatctttctttgtctctagaaccttgaacgtcacaataagggaaacacaaga |
432 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||| | |||| ||||||||||||||| |||| |||||||||||| | |||||||||||||||||| |
|
|
| T |
3991243 |
ctccggaagacaaatgcgccattgaattggaacaacttcactctgaacaatctttcttcgtctgtagaaccttgaatatatcaataagggaaacacaagg |
3991342 |
T |
|
| Q |
433 |
ttatta |
438 |
Q |
| |
|
|||||| |
|
|
| T |
3991343 |
ttatta |
3991348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 217
Target Start/End: Original strand, 4013305 - 4013367
Alignment:
| Q |
155 |
gaaggtcacaaaaaagtttttgtcttactttacagctctaacaatatctacaaatatagaact |
217 |
Q |
| |
|
|||||| ||||||| ||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
4013305 |
gaaggtaacaaaaatgttttggtcttactctacagctcatacaatatctacaaatatagaact |
4013367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 4027923 - 4027985
Alignment:
| Q |
485 |
aaattaatggtcatagcaataagaaagcaatttctgaccttcaatgctttggctgctagagat |
547 |
Q |
| |
|
|||||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
4027923 |
aaattaatggccatagcctgaagaaagcaattactgaccttgaatgctttggctgctagagat |
4027985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 283 - 438
Target Start/End: Original strand, 13400438 - 13400591
Alignment:
| Q |
283 |
aaatttgaaattgataagcagagtatttacagcatatattgtttgagagtctccagaagacaaatatgccattggattggaacaagtgcactatgaacaa |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||| || |||||||||| |
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|
| T |
13400438 |
aaatttgaaattgataagcagagtatttacagcatatattgttggagaggctccagaagaaaaatatgccattggattggaacaa--gcgctatgaacaa |
13400535 |
T |
|
| Q |
383 |
tctttctttgtctctagaaccttgaacgtcacaataagggaaacacaagattatta |
438 |
Q |
| |
|
|||||||||||||| |||||||||||| || |||||||||||||||||| |||||| |
|
|
| T |
13400536 |
tctttctttgtctcaagaaccttgaacatcgcaataagggaaacacaaggttatta |
13400591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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