View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0608_high_4 (Length: 333)
Name: NF0608_high_4
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 3 - 319
Target Start/End: Complemental strand, 13883839 - 13883502
Alignment:
| Q |
3 |
gatgtcgaagaatatggaaagttattgccatttttcatatgtcattcttcataaacaagcctattg---------------------atacctgttctgc |
81 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13883839 |
gatgttgaagaagatggaaagttattgccatttttcatatgtcattcttcataaacaagcctattgttatgattttccacattgttgatacctgttctgc |
13883740 |
T |
|
| Q |
82 |
actgcattagagtatgatgtcttactctgttggattgtgtttctgaatttctattctcgtannnnnnncttgagatatgttgcttcttgttacgtggtgt |
181 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | |
|
|
| T |
13883739 |
actgcattagagtatgacgtcttactctgttggattgtgtttctgaatttctattctcgtatttttttcttgagacatgttgcttcttgttacgtggtat |
13883640 |
T |
|
| Q |
182 |
ggtagacttcttgtttcagataagaggcataagacaagctttgcaactgaagagttcatggcgctatcaaacattcgttaaatcagttcctcataatgtt |
281 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
13883639 |
ggaagacttcttgtttcagataagaggcataagacaagctttgcatctgaagagttcatggcgctatcaaacattcgttaaatcagttcctcatattgtt |
13883540 |
T |
|
| Q |
282 |
ttccttcacacgacagaccgtacattctaagctgggta |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
13883539 |
ttccttcacacgacagaccgtacattctaagttgggta |
13883502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 87 - 136
Target Start/End: Complemental strand, 13857608 - 13857559
Alignment:
| Q |
87 |
attagagtatgatgtcttactctgttggattgtgtttctgaatttctatt |
136 |
Q |
| |
|
||||||| ||| ||||||| ||| |||||||||||||||||||||||||| |
|
|
| T |
13857608 |
attagagaatggtgtcttattctattggattgtgtttctgaatttctatt |
13857559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 13866127 - 13866076
Alignment:
| Q |
87 |
attagagtatgatgtcttactctgttggattgtgtttctgaatttctattct |
138 |
Q |
| |
|
||||||| ||||| ||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
13866127 |
attagagaatgatttcttattcttttggattgtgtttctgaatttatattct |
13866076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2543 times since January 2019
Visitors: 3822