View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_13 (Length: 357)

Name: NF0608_low_13
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_13
NF0608_low_13
[»] chr8 (1 HSPs)
chr8 (95-357)||(32428160-32428422)


Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 95 - 357
Target Start/End: Original strand, 32428160 - 32428422
Alignment:
Q  95 cctctttggattatattctaaaattgattaacatttgagatgattggagctaactctcacatcttatgtctcattccattaaatttttatgtttgattcc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32428160 cctctttggattatattctaaaattgattaacatttgagatgattggagctaactctcacatcttatgtctcattccattaaatttttatgtttgattcc 32428259  T
Q  195 aatgtaacgtttgtggtggctttggatccccatgtggattttagttgtggtgtttggt-cccatgcccataccatgggctcgtgctccactactgcccat 293  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||    
T  32428260 aatgtaacgtttgtggtggctttggatccccatgtgga-tttagttgtggtgtttggtccccatgcccataccatgggctcgtgctccactactgcctat 32428358  T
Q  294 attatctattacaaccagtggagttgtacaactcttgtaccaccagcatgatcccacagtcaac 357  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  32428359 attatctattacaatcagtggagttgtacaactcttgtaccaccagcatgatcccacagtcaac 32428422  T

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