View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_14 (Length: 357)

Name: NF0608_low_14
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_14
NF0608_low_14
[»] chr7 (7 HSPs)
chr7 (72-271)||(17734464-17734663)
chr7 (72-271)||(17743704-17743903)
chr7 (72-271)||(16720480-16720679)
chr7 (72-271)||(17697494-17697693)
chr7 (72-271)||(17716413-17716612)
chr7 (72-271)||(16729353-16729552)
chr7 (72-271)||(17706425-17706624)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17734663 - 17734464
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  17734663 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 17734564  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||    
T  17734563 ccggcagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagtttttgattggataacaagtgtttggtgatgt 17734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17743903 - 17743704
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    ||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  17743903 gagcacagaagaaacaacctgagagcataacgatttgagatcaccggtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggag 17743804  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||| ||||||    
T  17743803 ccggtagcgatcataatgagtacggtgttgagcgataatggtgaaaacacaatgttcttttcattgagtttttgattggataacaagtgtttggtgatgt 17743704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 16720679 - 16720480
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||    
T  16720679 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag 16720580  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    |||||||  |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||    
T  16720579 ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt 16720480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17697693 - 17697494
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||| ||||| | |||||||||||||    
T  17697693 gagcacagaagaaacaagctgagagcataaggatttgagatcaccggtggattcagactggagaaaggagagaagttgtttttgagtgggaccctcggag 17697594  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    |||||||  |||||| |||| |||||||| |||||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||| ||||||    
T  17697593 ccggtagcaatcatactgagcacggtgttaagcgataatggtgaaaacacaacgttctcttctttgagtttttgattggataacaagtgtttggtgatgt 17697494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17716612 - 17716413
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    ||||||||||||||| ||| ||||| ||||||||||||||| ||||  |||||| |||||||||||| |||||||||| ||||| | |||||||||||||    
T  17716612 gagcacagaagaaaccagccgagagtataaggatttgagattaccgggggattctgactggaggaaggagagaagttgtttttgagtgggaccctcggag 17716513  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    ||||||| ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| |||||||||| || |||||||||||||||| ||||||    
T  17716512 ccggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacattcttttctttgagtttttgattggataacaagtgtttggtgatgt 17716413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 16729552 - 16729353
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | |||||||| ||||    
T  16729552 gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag 16729453  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    | ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||| ||||||    
T  16729452 ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt 16729353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 72 - 271
Target Start/End: Complemental strand, 17706624 - 17706425
Alignment:
Q  72 gagcacagaagaaacaagctgagagcataaggatttgagatcaccgatggattcagactggaggaagaagagaagttggttttgtgcgggaccctcggag 171  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||||||   |||||||||||||||||| |||||||||| ||||| | |||||||| ||||    
T  17706624 gagcacagaagaaaccagccgagagtataaggatttgagatcaccgggagattcagactggaggaaggagagaagttgtttttgagtgggacccttggag 17706525  T
Q  172 ccggtagtgatcataatgagtacggtgttgagcgataatggtgaaaacacaacgttcttttcattgagttttttatcggataacaagtgtttgatgatgt 271  Q
    | ||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||| || || |||||||||||||||| ||||||    
T  17706524 ctggtagcgatcatactgagcacggtgttgagcgataatggtgaaaacacaacgttcttttctttgagttcttgattggataacaagtgtttggtgatgt 17706425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 76 times since January 2019
Visitors: 3832