View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_19 (Length: 311)
Name: NF0608_low_19
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0608_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 99 - 275
Target Start/End: Original strand, 17507904 - 17508083
Alignment:
Q |
99 |
atcttcattctttacaagcttcatattcactttagctagtgtagattcaagattgcagctcat---gttgaatctcatcggaatatcaatatattatttc |
195 |
Q |
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T |
17507904 |
atcttcattctttacaagcttcagattcacttcagctagtgtagattcaagattgcagctcatcaggttgaatctcttcgaaatatcaatatattatttc |
17508003 |
T |
 |
Q |
196 |
ttctaatgcattgctaaacctttcaaagttttagtgaattccattctctttagctagggtttccttcttctcctctcttc |
275 |
Q |
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T |
17508004 |
ttctaatgcattgctaaacctttcaaagtcttagtgaattccattctctttagagagggtttccttcttctcctctcttc |
17508083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Complemental strand, 1831827 - 1831752
Alignment:
Q |
99 |
atcttcattctttacaagcttcatattcactttagctagtgtagattcaagattgcagc---tcatgttgaatctc |
171 |
Q |
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T |
1831827 |
atcttcattctttacaagcttaagattcacttcagatggtgtagatgcaggattgaagcccatcatgttgaatctc |
1831752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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