View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_21 (Length: 308)

Name: NF0608_low_21
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_21
NF0608_low_21
[»] chr2 (9 HSPs)
chr2 (87-276)||(15658075-15658264)
chr2 (111-274)||(15628297-15628460)
chr2 (111-276)||(15648854-15649019)
chr2 (111-274)||(15611215-15611378)
chr2 (118-276)||(15536866-15537024)
chr2 (118-265)||(15523785-15523932)
chr2 (118-275)||(15504225-15504382)
chr2 (26-90)||(21748977-21749043)
chr2 (26-90)||(21753554-21753620)
[»] chr8 (6 HSPs)
chr8 (26-88)||(25644950-25645012)
chr8 (26-89)||(20026067-20026131)
chr8 (26-87)||(22105675-22105737)
chr8 (26-87)||(6665260-6665322)
chr8 (26-87)||(6672924-6672986)
chr8 (26-87)||(16738831-16738893)
[»] chr5 (12 HSPs)
chr5 (26-96)||(37587279-37587349)
chr5 (26-87)||(37578169-37578230)
chr5 (26-87)||(36434058-36434120)
chr5 (26-87)||(21746396-21746458)
chr5 (26-87)||(24060362-24060424)
chr5 (26-87)||(34461593-34461656)
chr5 (26-87)||(34475850-34475913)
chr5 (51-87)||(15955490-15955526)
chr5 (51-87)||(36369270-36369306)
chr5 (51-87)||(36383198-36383234)
chr5 (51-87)||(36993931-36993967)
chr5 (51-87)||(37007869-37007905)
[»] scaffold0799 (1 HSPs)
scaffold0799 (26-87)||(4685-4746)
[»] chr4 (11 HSPs)
chr4 (26-87)||(55791102-55791163)
chr4 (34-87)||(3368432-3368485)
chr4 (34-88)||(22139874-22139928)
chr4 (34-87)||(22151789-22151842)
chr4 (26-87)||(736268-736330)
chr4 (26-87)||(745785-745847)
chr4 (26-87)||(10219420-10219482)
chr4 (34-87)||(3358766-3358814)
chr4 (26-90)||(40815437-40815503)
chr4 (55-87)||(732760-732792)
chr4 (53-89)||(3396058-3396094)
[»] chr6 (7 HSPs)
chr6 (34-89)||(22064146-22064201)
chr6 (26-88)||(20073196-20073259)
chr6 (26-91)||(18869701-18869767)
chr6 (26-87)||(34271015-34271077)
chr6 (26-88)||(27647386-27647449)
chr6 (26-87)||(22597664-22597726)
chr6 (33-88)||(22231071-22231127)
[»] scaffold0361 (1 HSPs)
scaffold0361 (34-87)||(2563-2616)
[»] chr7 (16 HSPs)
chr7 (34-87)||(3422199-3422252)
chr7 (34-87)||(3431355-3431408)
chr7 (34-88)||(16280283-16280338)
chr7 (34-87)||(16294486-16294540)
chr7 (26-88)||(16263589-16263652)
chr7 (26-87)||(16271256-16271318)
chr7 (26-83)||(12605878-12605936)
chr7 (26-87)||(17465262-17465324)
chr7 (26-87)||(17587890-17587952)
chr7 (26-87)||(791769-791832)
chr7 (26-87)||(805604-805667)
chr7 (26-84)||(37288159-37288218)
chr7 (34-87)||(12595681-12595735)
chr7 (26-87)||(26125718-26125780)
chr7 (51-87)||(4889046-4889082)
chr7 (51-87)||(5765711-5765747)
[»] chr1 (6 HSPs)
chr1 (34-87)||(20311921-20311974)
chr1 (26-88)||(22477312-22477376)
chr1 (26-87)||(2687000-2687062)
chr1 (26-87)||(27167613-27167675)
chr1 (26-88)||(18702704-18702767)
chr1 (29-87)||(27171338-27171398)
[»] chr3 (15 HSPs)
chr3 (26-89)||(20449972-20450036)
chr3 (26-88)||(30023047-30023110)
chr3 (26-87)||(20436046-20436108)
chr3 (26-87)||(30013621-30013683)
chr3 (26-87)||(41433212-41433274)
chr3 (26-87)||(41441709-41441771)
chr3 (34-87)||(3677054-3677108)
chr3 (34-87)||(3686189-3686243)
chr3 (26-87)||(16469179-16469241)
chr3 (26-90)||(27874273-27874338)
chr3 (26-88)||(14737907-14737970)
chr3 (26-88)||(6956564-6956629)
chr3 (26-87)||(6970845-6970909)
chr3 (26-88)||(12703055-12703118)
chr3 (51-99)||(8814283-8814331)
[»] scaffold0125 (2 HSPs)
scaffold0125 (26-87)||(17355-17417)
scaffold0125 (26-87)||(10433-10495)
[»] scaffold0582 (1 HSPs)
scaffold0582 (26-87)||(5819-5881)
[»] scaffold0051 (1 HSPs)
scaffold0051 (26-87)||(56646-56708)
[»] scaffold0560 (1 HSPs)
scaffold0560 (34-87)||(10860-10914)
[»] scaffold0014 (2 HSPs)
scaffold0014 (26-87)||(186539-186601)
scaffold0014 (33-88)||(170032-170088)
[»] scaffold0016 (1 HSPs)
scaffold0016 (26-88)||(56384-56447)
[»] scaffold0007 (1 HSPs)
scaffold0007 (56-87)||(63484-63515)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 15658075 - 15658264
Alignment:
Q  87 aatatgtatatatgaaacataattaaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctgg 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15658075 aatatgtatatatgaaacataattaaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctgg 15658174  T
Q  187 atttatggcacaatataaaatatttttggcttttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttcaa 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  15658175 atttatggcacaatataaaatatttttggcttttgcttcttgttccatgttcttgatatcttcatcattgaattcatcttcagatttcaa 15658264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 15628297 - 15628460
Alignment:
Q  111 aaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatt 210  Q
    |||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  15628297 aaacacttaacctgtcaagctcctcccacatttccttggctgtctgacaacttgaaattcttttaagatcatctggatttaaggcacaacataaaatatt 15628396  T
Q  211 tttggcttttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttc 274  Q
    |||||||||||||||| |||||| ||||||| |||||||| |||||||||||||||||||||||    
T  15628397 tttggcttttgcttctagttccacgttcttcttatcttcaccattgaattcatcttcagatttc 15628460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 111 - 276
Target Start/End: Original strand, 15648854 - 15649019
Alignment:
Q  111 aaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatt 210  Q
    |||||| |||| ||||||||| ||||||||||| ||| | ||||||||||||||||||||| | || ||||||| |||||||||||||| ||||||||||    
T  15648854 aaacacttaacttgtcaagctgctcccacattttcttggctgtctgacaacttgaaattctcttaaaatcatcttgatttatggcacaagataaaatatt 15648953  T
Q  211 tttggcttttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttcaa 276  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  15648954 tttggcttttgcttcttgttccatgttcttgatatcttcttcattgaattcatcttcagatttcaa 15649019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 111 - 274
Target Start/End: Original strand, 15611215 - 15611378
Alignment:
Q  111 aaacacctaacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatt 210  Q
    |||||| |||| |||| ||||||||||||||||||||||  || || |||||||||||||||   ||||||||||| |||| ||||||||||||||||||    
T  15611215 aaacacttaacttgtcgagctcctcccacatttcctttgccgtatggcaacttgaaattcttcttagatcatctgggtttaaggcacaatataaaatatt 15611314  T
Q  211 tttggcttttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttc 274  Q
    |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||    
T  15611315 tttggcttttgcttctcgttccatgatcttcttatcttcatcattgaattcatcttcagatttc 15611378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 118 - 276
Target Start/End: Original strand, 15536866 - 15537024
Alignment:
Q  118 taacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatttttggct 217  Q
    ||||||||| |||||||||||||||||||| |  || || ||||||||||||||| |||||||||  || |||| |||||||||||||||| ||||||||    
T  15536866 taacctgtcgagctcctcccacatttccttagccgtatggcaacttgaaattcttccaagatcattcgggtttaaggcacaatataaaatagttttggct 15536965  T
Q  218 tttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttcaa 276  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||    
T  15536966 tttgcttctagttccatgttcttcatatcttcatcattgaattcatctaccgatttcaa 15537024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 118 - 265
Target Start/End: Original strand, 15523785 - 15523932
Alignment:
Q  118 taacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatttttggct 217  Q
    |||| ||||||||| |||||| | ||||||||  |||||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||| |||    
T  15523785 taacttgtcaagcttctcccatacttcctttgccgtctgacaacttaaaattctcttaagatcatctggatttatggcacaacataaaatatttttagct 15523884  T
Q  218 tttgcttcttgttccatgttcttcatatcttcatcattgaattcatct 265  Q
    ||| ||||| |||||||| ||||| |||||||||||||||||||||||    
T  15523885 tttacttctggttccatgatcttcctatcttcatcattgaattcatct 15523932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 275
Target Start/End: Original strand, 15504225 - 15504382
Alignment:
Q  118 taacctgtcaagctcctcccacatttcctttgatgtctgacaacttgaaattctttcaagatcatctggatttatggcacaatataaaatatttttggct 217  Q
    ||||||| |||||| |||||||||||||||||  ||||| || ||||||||| | ||||||| ||||| |||||  ||||||  |||||||| |||||||    
T  15504225 taacctggcaagcttctcccacatttcctttgccgtctggcatcttgaaattttctcaagataatctgaatttaaagcacaacgtaaaatatgtttggct 15504324  T
Q  218 tttgcttcttgttccatgttcttcatatcttcatcattgaattcatcttcagatttca 275  Q
    |||||||||||||||||  | ||| |||||||||||||||||| ||||||||||||||    
T  15504325 tttgcttcttgttccataatattcttatcttcatcattgaattgatcttcagatttca 15504382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 21749043 - 21748977
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgacaata 90  Q
    ||||||| |||| |||||||||  | |||||||||||||| ||| ||||||||||||||||||||||    
T  21749043 gtgagataaaaactgagtcaaacgctaatcaaatggcctttgacctccgaaaaatggcgcgacaata 21748977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 21753620 - 21753554
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgacaata 90  Q
    ||||||| |||| |||||||||  | |||||||||||||| ||| ||||||||||||||||||||||    
T  21753620 gtgagataaaaactgagtcaaacgctaatcaaatggcctttgacctccgaaaaatggcgcgacaata 21753554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 25644950 - 25645012
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25644950 gtgagataaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 25645012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 20026131 - 20026067
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 89  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20026131 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 20026067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 22105737 - 22105675
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||    
T  22105737 gtgagataaaaagtgagtcaaacgccaatcaaatggccttgacctccgaaaaatggcgcgaca 22105675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6665260 - 6665322
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||||||||||||| |||||||||    
T  6665260 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacgtccgaaaaaaggcgcgaca 6665322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 6672924 - 6672986
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||||||||||||| |||||||||    
T  6672924 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacgtccgaaaaaaggcgcgaca 6672986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 16738831 - 16738893
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||  |||||||||||||  | ||||||||| ||||||| |||||||||||||||||||    
T  16738831 gtgagatagaaagtgagtcaaaagctaatcaaatgaccttgacctccgaaaaatggcgcgaca 16738893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 26 - 96
Target Start/End: Original strand, 37587279 - 37587349
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaatatgtata 96  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  37587279 gtgagataaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacattatttata 37587349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 37578169 - 37578230
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37578169 gtgagataaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 37578230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 36434058 - 36434120
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  36434058 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 36434120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 21746458 - 21746396
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  21746458 gtgagataaaaagtgagtcaaacgctaatcaaatggccttgacctccgaaaaatggcgcgaca 21746396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 24060424 - 24060362
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  24060424 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 24060362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 34461593 - 34461656
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  34461593 gtgagataaaaagtgagtcaaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgaca 34461656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 34475850 - 34475913
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  34475850 gtgagataaaaagtgagtcaaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgaca 34475913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 15955526 - 15955490
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  15955526 aatcaaatggccttgacctccgaaaaatgacgcgaca 15955490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 36369306 - 36369270
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||| |||||||||||||||||||| |||||||    
T  36369306 aatcaaatagccttgacgtccgaaaaatgacgcgaca 36369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 36383234 - 36383198
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||| |||||||||||||||||||| |||||||    
T  36383234 aatcaaatagccttgacgtccgaaaaatgacgcgaca 36383198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 36993967 - 36993931
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||| |||||||||||||||||||| |||||||    
T  36993967 aatcaaatagccttgacgtccgaaaaatgacgcgaca 36993931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 37007905 - 37007869
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||| |||||||||||||||||||| |||||||    
T  37007905 aatcaaatagccttgacgtccgaaaaatgacgcgaca 37007869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0799 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0799
Description:

Target: scaffold0799; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 4685 - 4746
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4685 gtgagataaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 4746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 55791102 - 55791163
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55791102 gtgagataaaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 55791163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 3368432 - 3368485
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3368432 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 3368485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 22139928 - 22139874
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  22139928 aaaagtgagtcaaagtcaatcaagtggccttgacatccgaaaaatggcgcgacaa 22139874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 22151842 - 22151789
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||||||||||    
T  22151842 aaaagtgagtcaaagtcaatcaagtggccttgacatccgaaaaatggcgcgaca 22151789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 736330 - 736268
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  736330 gtgagataaatagtgagtcaaaagtcaatcaaatggccttgacctccgaaaaatggcgcgaca 736268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 745847 - 745785
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  745847 gtgagataaatagtgagtcaaaagtcaatcaaatggccttgacctccgaaaaatggcgcgaca 745785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 10219482 - 10219420
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  10219482 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacctccgaaaaatggcgcgaca 10219420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 3358766 - 3358814
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  3358766 aaaagtgagtcaaagt-----aaatggccttgacgtccgaaaaatggcgcgaca 3358814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 40815503 - 40815437
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgacaata 90  Q
    ||||||| |||| |||||||||  | |||||||||||||| ||| ||||||||||||||||||||||    
T  40815503 gtgagataaaaactgagtcaaacgctaatcaaatggcctttgacctccgaaaaatggcgcgacaata 40815437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 87
Target Start/End: Original strand, 732760 - 732792
Alignment:
Q  55 aaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||| |||||||||||||||||||    
T  732760 aaatggccttgacctccgaaaaatggcgcgaca 732792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 89
Target Start/End: Complemental strand, 3396094 - 3396058
Alignment:
Q  53 tcaaatggccttgacgtccgaaaaatggcgcgacaat 89  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  3396094 tcaaatggccttgacctccgaaaaatggtgcgacaat 3396058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 89
Target Start/End: Complemental strand, 22064201 - 22064146
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 89  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22064201 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 22064146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 20073259 - 20073196
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  20073259 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacatccgaaaaatggcgcgacaa 20073196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 18869701 - 18869767
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaatat 91  Q
    ||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  18869701 gtgagataaaaagtgagtcaaacgccaatcaaatggccttgacctccgaaaaatggcgcgacaatat 18869767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 34271015 - 34271077
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||||||||||||||||||||||||||    
T  34271015 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacgtccgaaaaatggcgcgaca 34271077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 27647386 - 27647449
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| ||||| |||||||| | || ||||||||||||||| ||||||||||||||||||||    
T  27647386 gtgagataaaaagcgagtcaaacgccagtcaaatggccttgacctccgaaaaatggcgcgacaa 27647449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 22597726 - 22597664
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||  |||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  22597726 gtgagatagaaagtgagtcaaaagctaatcaaatggccttgacctccgaaaaatggcgcgaca 22597664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 22231127 - 22231071
Alignment:
Q  33 gaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    |||||||||||||||  | ||||||||||| ||||| ||||||||||| ||||||||    
T  22231127 gaaaagtgagtcaaacgctaatcaaatggctttgacctccgaaaaatgacgcgacaa 22231071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 2563 - 2616
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2563 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 2616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 3422252 - 3422199
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3422252 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 3422199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 3431408 - 3431355
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3431408 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 3431355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 16280338 - 16280283
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggcc-ttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16280338 aaaagtgagtcaaagtcaatcaaatggcctttgacgtccgaaaaatggcgcgacaa 16280283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 16294540 - 16294486
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggcc-ttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  16294540 aaaagtgagtcaaagtcaatcaaatggcctttgacgtccgaaaaatggcgcgaca 16294486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 16263652 - 16263589
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggcc-ttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||||||||||  |||||||||||| ||||||||||||||||||||||||||    
T  16263652 gtgagataaaaagtgagtcaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgacaa 16263589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 16271318 - 16271256
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtcaatcaaatggcc-ttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||||  |||||||||||| |||||||||||||||||||||||||    
T  16271318 gtgagataaaaagtgagtcaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgaca 16271256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 12605936 - 12605878
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgc 83  Q
    ||||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||    
T  12605936 gtgagataaatagtgagtcaaaagtcaatcaaatggccttgacctccgaaaaatggcgc 12605878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17465262 - 17465324
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  17465262 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 17465324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 17587952 - 17587890
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  17587952 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 17587890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 791832 - 791769
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  791832 gtgagataaaaagtgagtcaaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgaca 791769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 805667 - 805604
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggcctt-gacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||| |||||||||||||||||||||||    
T  805667 gtgagataaaaagtgagtcaaaagctaatcaaatggcctttgacgtccgaaaaatggcgcgaca 805604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 37288159 - 37288218
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcg 84  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| ||||||||||||||||    
T  37288159 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcg 37288218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 12595681 - 12595735
Alignment:
Q  34 aaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||||||||| | |||||||||||||||||| || ||||||||||||||||    
T  12595681 aaaagtgagtcaaaagccaatcaaatggccttgacctcggaaaaatggcgcgaca 12595735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 26125718 - 26125780
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||| ||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  26125718 gtgagataaaaagcgagtcaaaagctaatcaaatggccttgacctccgaaaaatggcgcgaca 26125780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 87
Target Start/End: Complemental strand, 4889082 - 4889046
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||| |||||||||||||||||||    
T  4889082 aatcaaatggccttgacctccgaaaaatggcgcgaca 4889046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 5765711 - 5765747
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||| |||||||||||||||||||| |||||||    
T  5765711 aatcaaatagccttgacgtccgaaaaatgacgcgaca 5765747  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 87
Target Start/End: Complemental strand, 20311974 - 20311921
Alignment:
Q  34 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20311974 aaaagtgagtcaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 20311921  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 22477376 - 22477312
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggcctt-gacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  22477376 gtgagataaaaagtgagtcaaaagtcaatcaaatggcctttgacgtccgaaaaatggcgcgacaa 22477312  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 2687000 - 2687062
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| |  |||||||||||||||||||||||||||||||||||||    
T  2687000 gtgagataaaaagtgagtcaaaagaaaatcaaatggccttgacgtccgaaaaatggcgcgaca 2687062  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 27167613 - 27167675
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  27167613 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 27167675  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 18702767 - 18702704
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| ||||| |||||||| | || ||||||||||||||| ||||||||||||||||||||    
T  18702767 gtgagataaaaagcgagtcaaacgccagtcaaatggccttgacctccgaaaaatggcgcgacaa 18702704  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 27171338 - 27171398
Alignment:
Q  29 agatgaaaagtgagtcaaa--gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||| ||||||||||||||  |  ||||||||||||||||| |||||||||||||||||||    
T  27171338 agataaaaagtgagtcaaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 27171398  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 20449972 - 20450036
Alignment:
Q  26 gtgagatgaaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 89  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20449972 gtgagataaaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaat 20450036  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 30023047 - 30023110
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30023047 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgacaa 30023110  T

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Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 20436046 - 20436108
Alignment:
Q  26 gtgagatgaaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20436046 gtgagataaaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 20436108  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 30013621 - 30013683
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30013621 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 30013683  T

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Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 41433212 - 41433274
Alignment:
Q  26 gtgagatgaaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41433212 gtgagataaaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 41433274  T

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Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 41441709 - 41441771
Alignment:
Q  26 gtgagatgaaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  41441709 gtgagataaaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 41441771  T

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Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 3677054 - 3677108
Alignment:
Q  34 aaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3677054 aaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 3677108  T

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Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 3686189 - 3686243
Alignment:
Q  34 aaaagtgagtcaa-agtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3686189 aaaagtgagtcaagagtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 3686243  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 16469241 - 16469179
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  16469241 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 16469179  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 27874273 - 27874338
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaata 90  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||| |||||||    
T  27874273 gtgagataaaaagtgagtcaaacgctaatcaaatggccttgacctccgaaaaatggcgtgacaata 27874338  T

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Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 14737970 - 14737907
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| | ||||||||||||||||||    
T  14737970 gtgagataaaaagtgagtcaaacgctaatcaaatggccttgaccttcgaaaaatggcgcgacaa 14737907  T

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Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 6956629 - 6956564
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaa--tggcgcgacaa 88  Q
    ||||||| ||||||||||||||  | |||||||||||||||||||||||||||  |||||||||||    
T  6956629 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacgtccgaaaaaagtggcgcgacaa 6956564  T

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Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 6970909 - 6970845
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaa--tggcgcgaca 87  Q
    ||||||| ||||||||||||||  | |||||||||||||||||||||||||||  ||||||||||    
T  6970909 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacgtccgaaaaaagtggcgcgaca 6970845  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 88
Target Start/End: Original strand, 12703055 - 12703118
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| ||||||||||||||  | |||||| |||||||||| ||||||||||| ||||||||    
T  12703055 gtgagataaaaagtgagtcaaaagctaatcaactggccttgacctccgaaaaatgacgcgacaa 12703118  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 8814283 - 8814331
Alignment:
Q  51 aatcaaatggccttgacgtccgaaaaatggcgcgacaatatgtatatat 99  Q
    |||||||| |||||||  ||||||||||| ||||||||||| |||||||    
T  8814283 aatcaaatagccttgatctccgaaaaatgacgcgacaatatatatatat 8814331  T

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Target: scaffold0125 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 17355 - 17417
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||||    
T  17355 gtgagataaaaagtgagtcaaaagtcaatcaaatggccttgacatccgaaaaatggcgcgaca 17417  T

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Target: scaffold0125; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Original strand, 10433 - 10495
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  10433 gtgagataaaaagtgagtcaaaagtgaatcaaatggccttgacatccgaaaaatggcgcgaca 10495  T

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Target: scaffold0582 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0582
Description:

Target: scaffold0582; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 5881 - 5819
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| | |||||||||||||||||| |||||||||||||||||||    
T  5881 gtgagataaaaagtgagtcaaaagccaatcaaatggccttgacctccgaaaaatggcgcgaca 5819  T

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Target: scaffold0051 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 56708 - 56646
Alignment:
Q  26 gtgagatgaaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||||    
T  56708 gtgagataaaaagtgagtcaaaagccaatcaaatggcattgacgtccgaaaaatggcgcgaca 56646  T

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Target: scaffold0560 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0560
Description:

Target: scaffold0560; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 10860 - 10914
Alignment:
Q  34 aaaagtgagtcaaa-gtcaatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    |||||||||||||| | |||||||||||||||||| |||||||||||||||||||    
T  10860 aaaagtgagtcaaaagccaatcaaatggccttgacatccgaaaaatggcgcgaca 10914  T

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Target: scaffold0014 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 87
Target Start/End: Complemental strand, 186601 - 186539
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||| ||||||||||||||  | ||||||||||||||||| |||||||||||||||||||    
T  186601 gtgagataaaaagtgagtcaaaagctaatcaaatggccttgacatccgaaaaatggcgcgaca 186539  T

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Target: scaffold0014; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 170088 - 170032
Alignment:
Q  33 gaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    |||||||||||||||  | ||||||||||||||||| ||| ||||||||||||||||    
T  170088 gaaaagtgagtcaaacgctaatcaaatggccttgacctcccaaaaatggcgcgacaa 170032  T

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Target: scaffold0016 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 88
Target Start/End: Complemental strand, 56447 - 56384
Alignment:
Q  26 gtgagatgaaaagtgagtcaaagtc-aatcaaatggccttgacgtccgaaaaatggcgcgacaa 88  Q
    ||||||| |||||||| |||||  | ||||||||||||||||| ||||||||||||||||||||    
T  56447 gtgagataaaaagtgattcaaacgctaatcaaatggccttgacctccgaaaaatggcgcgacaa 56384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 56 - 87
Target Start/End: Original strand, 63484 - 63515
Alignment:
Q  56 aatggccttgacgtccgaaaaatggcgcgaca 87  Q
    ||||||||||||||||||||||||||||||||    
T  63484 aatggccttgacgtccgaaaaatggcgcgaca 63515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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