View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_23 (Length: 304)
Name: NF0608_low_23
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 33 - 302
Target Start/End: Complemental strand, 38323550 - 38323281
Alignment:
| Q |
33 |
atataggcaaaaataacaaggctggtccaagctgcatcctctaaagttttgtttgaaattttttctcctgatatcttcactctttatttggtttccatcg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38323550 |
atataggcaaaaataacaaggctggtccaagctgcatcctctaaggttttgtttgaaattttttctcctgatatcttcactctttatttggtttccatcg |
38323451 |
T |
|
| Q |
133 |
gattccttcgacttgagataaccctgttcgaggcacgtctggacactaacatccttatgagtatagggacttctacatggcttttgataataaatcatgt |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
38323450 |
gattccttcgacttgagataaccctgttcgaggcacgtctggacactaacatccttatgagtagagggacttctacatggcttttgataataaatcatgt |
38323351 |
T |
|
| Q |
233 |
ctccaatatccacaatgtctatcttttctatggaggatgatcttcttcttaatcttttcctagggttcct |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
38323350 |
ctccaatatccacaatgtctatcttttctatggaggatgatcttcttcttgatcttttcctagggttcct |
38323281 |
T |
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