View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_24 (Length: 301)

Name: NF0608_low_24
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_24
NF0608_low_24
[»] chr7 (12 HSPs)
chr7 (60-301)||(22879152-22879393)
chr7 (60-301)||(22896784-22897025)
chr7 (60-301)||(22813542-22813783)
chr7 (60-301)||(22892468-22892709)
chr7 (139-301)||(22887892-22888054)
chr7 (139-301)||(22829625-22829787)
chr7 (139-300)||(22874522-22874683)
chr7 (150-301)||(22808225-22808376)
chr7 (139-301)||(22803930-22804092)
chr7 (139-301)||(22838646-22838808)
chr7 (139-301)||(22870428-22870590)
chr7 (217-300)||(22912331-22912414)
[»] chr1 (1 HSPs)
chr1 (169-301)||(21151958-21152090)


Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 22879152 - 22879393
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||     
T  22879152 cagagagaagtgaatcagcaagagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaaatatttgtt 22879251  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 259  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22879252 cccaaaagttaatccagaagaagataaactaggcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacctggtcta 22879351  T
Q  260 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22879352 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 22879393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 22896784 - 22897025
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||||||||||||||||||||||||| || || |||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  22896784 cagagagaagtgaatcagcaatagacacagaggtgtgtgacattgtgttgcccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 22896883  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| | |||||||||||||||| |||||||    
T  22896884 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggtaaaggtatatccctttccaaatactgtacaacttgtctcatacctggtcta 22896983  T
Q  260 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22896984 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 22897025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 22813542 - 22813783
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    |||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||    
T  22813542 cagagagaagtgaatcagaaatagaaacagaagtatgtgacattgtcttgtccatggaagaaggatacgacaaaggaaagtcctcaaaatattcttggta 22813641  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 259  Q
    |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||    
T  22813642 cccaaaagttaatccagaagaagataaactaagcgaaggcaaatctggcaaaggtatatcccgctccaaatactgcacaacttgtctcatacctggtcta 22813741  T
Q  260 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  22813742 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 22813783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 60 - 301
Target Start/End: Original strand, 22892468 - 22892709
Alignment:
Q  60 cagagagaagtgaatcagcaatagacacagacgtatgcgacattttcttgtccatagaagaaggataagacaaaggaaagtcctcaaaaaattcttggta 159  Q
    ||||||||| ||| || |||||||||||||| || || |||||| | ||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  22892468 cagagagaattgagtcggcaatagacacagaagtctgtgacattgtgttgcccatagaggaaggataagacaaaggaaagtcctcaaaaaattcttggta 22892567  T
Q  160 cccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtcta 259  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  22892568 cccaaaagttaatccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgtctcatacatggtcta 22892667  T
Q  260 gccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  22892668 gccaaaggttctgaatgtgaacacaacaatccaagtttcaac 22892709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 22887892 - 22888054
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| ||||  |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||| | |||    
T  22887892 gtcctcaacaaataattggtacccaaaagttaaaccagaagaagataaactaagcgaagaaaaatctggcaaaggtgtatccctctccaaatactgtaca 22887991  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  22887992 acttgtctcatacttggtctagccaaaggctctgaatgtgaacacaacaagccaagtttcaac 22888054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 22829625 - 22829787
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| | || ||||||||||||||  ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||| |||||    
T  22829625 gtcctcaacagatacttggtacccaaaaaataaaccagaagaagataaactaagcgaaaacaaatatggcaaaggtatatccctctccaaatactgcaca 22829724  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  22829725 acttgtctcatacctggtctagccaaaggttctgaatgtgaacacaacaatccaagtttcaac 22829787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 139 - 300
Target Start/End: Original strand, 22874522 - 22874683
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |||||    
T  22874522 gtcctcaacacattcttggtacccaaaagttaaaccaaaagaagataaactaagcgaagaaaaatctggcaaaggtatatccctctccaaatactgcaca 22874621  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaa 300  Q
    ||||| ||||| ||||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  22874622 acttgcctcatgcttggtctagccaaaggctctgaatgagaacacaacaatccaagtttcaa 22874683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 150 - 301
Target Start/End: Original strand, 22808225 - 22808376
Alignment:
Q  150 attcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcat 249  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  22808225 attcttggtacccaaaagttaaaccagaagaagataaactaagcgaagacaaatctggcaaagctatatccctctccaaatactgcacaacttgtctcat 22808324  T
Q  250 acttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    |||||||||| ||| ||| ||||||||  |||||||||| ||||||||||||    
T  22808325 acttggtctaaccagaggctctgaatgcaaacacaacaagccaagtttcaac 22808376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 22803930 - 22804092
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| || |||||||| |||||||||||| ||| | ||||||||||||||||| ||||||||||| ||||||| |||||||||||||||| |||||    
T  22803930 gtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaatctggtaaaggtaaatccctctccaaatactgcaca 22804029  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  22804030 acttgtctcatacttggtctagccaaaggctctgaatgtgaacacatcaagccaagtttcaac 22804092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 22838646 - 22838808
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| | |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||| || ||||||||| ||||||||||| |||||    
T  22838646 gtcctcaacacattcttggtacccaaaagttaaaccaaaagtagataaactaagcgaagacaaatctggaaagggtatatccgtctccaaatactgcaca 22838745  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||    
T  22838746 acttgcctcatacttggtctagccaaaggctctgaatgagaacacaacaatccaagtttcaac 22838808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 139 - 301
Target Start/End: Original strand, 22870428 - 22870590
Alignment:
Q  139 gtcctcaaaaaattcttggtacccaaaagttaaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcaca 238  Q
    |||||||| || |||||||| |||||||||||| ||| | ||||||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||    
T  22870428 gtcctcaacaagttcttggtgcccaaaagttaatccataggaagataaactaagcaatgacaaagctggtaaaggtatatccctctccaaatactgcaca 22870527  T
Q  239 acttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||    
T  22870528 acttgtctcatacttggtctagccaaaggctctgaatgtgaacacatcaagccaagtttcaac 22870590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 217 - 300
Target Start/End: Original strand, 22912331 - 22912414
Alignment:
Q  217 atccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggttctgaatgtgaacacaacaaaccaagtttcaa 300  Q
    ||||||||||||||||  || |||||||||||||||||||||||||||||  ||  |||||||||| |||||||||||||||||    
T  22912331 atccctctccaaatacctcaaaacttgtctcatacttggtctagccaaagcctcacaatgtgaacataacaaaccaagtttcaa 22912414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 169 - 301
Target Start/End: Complemental strand, 21152090 - 21151958
Alignment:
Q  169 taaaccagaagaagataaactaagcaaagacaaatctggcaaaggtatatccctctccaaatacagcacaacttgtctcatacttggtctagccaaaggt 268  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||     
T  21152090 taaaccagaagaagataaactaagtgaagacaaatctggcaaaggtatatccctctccaaatactgcacaacttgcctcatacttggtctagccaaaggc 21151991  T
Q  269 tctgaatgtgaacacaacaaaccaagtttcaac 301  Q
    || ||||||||||||||||| ||||||||||||    
T  21151990 tcggaatgtgaacacaacaagccaagtttcaac 21151958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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