View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_29 (Length: 284)
Name: NF0608_low_29
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 1863528 - 1863260
Alignment:
| Q |
1 |
gtcttaatattaacccaactatgaaaagtcatgtgctcctcgaacctagctactgattcgaaatattgttggtacatagccacactatagatatgttaca |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
1863528 |
gtcttaatattaacccaactatgaaaagtcatgtgctcctcgaacctagctactgattcgaaatattgttgttacatagccacactatagatatgttaca |
1863429 |
T |
|
| Q |
101 |
ttggagaatttgaataaactgacattgttattctatttagtgcnnnnnnnnnnttatgaaataacatatgtagcggagttatagcagtgttgagtagtgg |
200 |
Q |
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| T |
1863428 |
ttggagaatttgaataaactgccattgttattctatttagtgc-aaaaaaaaattatgaaataacatatgtagcggagttatagcagtgttgagtagtgg |
1863330 |
T |
|
| Q |
201 |
aatttgaccaaaccactatttttcgcgattcctaattgacaatactgagctgagtaataacgaaaacctc |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1863329 |
aatttgaccaaaccactatttttcgcgattcctaattgacaatactgagctgagtaataacgaaaacctc |
1863260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 221
Target Start/End: Complemental strand, 28976368 - 28976327
Alignment:
| Q |
180 |
tatagcagtgttgagtagtggaatttgaccaaaccactattt |
221 |
Q |
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||||||| ||||| |||||||||||||| ||||||||||||| |
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| T |
28976368 |
tatagcattgttgtgtagtggaatttgaacaaaccactattt |
28976327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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