View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend |
| Query |
| Query hiting target |
| Query hiting target's complemental strand |
| Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0608_low_31 (Length: 260)
Name: NF0608_low_31
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[»] NF0608_low_31 |
 |  |
|
[»] chr6 (1 HSPs) |
 |  |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 28 - 260
Target Start/End: Complemental strand, 3253883 - 3253649
Alignment:
Q |
28 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctc--gagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
125 |
Q |
|
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
3253883 |
catgaactacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcttgagtcttgacccaatgaatcgcagcaagtagcatgttcgct |
3253784 |
T |
 |
Q |
126 |
ttgcctatgggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
225 |
Q |
|
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
T |
3253783 |
ttgcctatgggaacagaaaaaaaaggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatacgttacactattaaagcttgta |
3253684 |
T |
 |
Q |
226 |
taaaagcgaaacatatacattacacttcataaaat |
260 |
Q |
|
|
||||||||||||||||||||||||||||||||||| |
|
|
T |
3253683 |
taaaagcgaaacatatacattacacttcataaaat |
3253649 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 204
Target Start/End: Complemental strand, 27757055 - 27756893
Alignment:
Q |
34 |
ctacaatcttggagtttgtagagaaaatcacattatcaaatccaagctctcgagtcttgacccaatgaatcgcagcaagtagcatgttcgctttgcctat |
133 |
Q |
|
|
||||||| ||||||| |||||||||||| | |||||||||||||||||||| ||||||||||||| ||| || |||| ||| ||| | |||| |
|
|
T |
27757055 |
ctacaattttggagtgtgtagagaaaattatattatcaaatccaagctctc------tgacccaatgaattgcaacaggtagtgctttcacttcggctat |
27756962 |
T |
 |
Q |
134 |
gggaacagaaaaaataggttctagccacatcgttttagctcaaacaaaaaaccctatttcatctcttatac |
204 |
Q |
|
|
| |||| ||||||| ||||| || ||||||||||||| ||| ||||||| |||||||| |||||||||| |
|
|
T |
27756961 |
gtgaac-gaaaaaa-aggttttaaccacatcgttttatctccaacaaaagcccctatttattctcttatac |
27756893 |
T |
 |
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
© Oklahoma State University