View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_35 (Length: 251)

Name: NF0608_low_35
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_35
NF0608_low_35
[»] chr1 (4 HSPs)
chr1 (1-238)||(31377143-31377380)
chr1 (1-238)||(43601257-43601493)
chr1 (4-72)||(43601541-43601609)
chr1 (4-72)||(31377027-31377096)
[»] chr4 (3 HSPs)
chr4 (1-238)||(40842604-40842841)
chr4 (4-72)||(7747259-7747327)
chr4 (1-69)||(7747139-7747207)
[»] chr8 (2 HSPs)
chr8 (1-238)||(36984765-36985002)
chr8 (4-72)||(36984650-36984718)


Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 31377143 - 31377380
Alignment:
Q  1 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaagcaagtaaagaggagaaaagggcgcata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  31377143 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaagcaggtaaagaggagaaaagggcgcata 31377242  T
Q  101 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagattgggttttaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  31377243 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagactgagttttaga 31377342  T
Q  201 atgaatgcttgagagaaaatacttgtgtatgttgatat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  31377343 atgaatgcttgagagaaaatacttgtgtatgttgatat 31377380  T

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Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43601493 - 43601257
Alignment:
Q  1 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaagcaagtaaagaggagaaaagggcgcata 100  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  43601493 cttaatctcaaatgggtttgattcaaaatctcaagttagtgttgtttcaatgaagaaatatgagattttgaagcaggtaaagaggagaaaagggcacata 43601394  T
Q  101 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagattgggttttaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  43601393 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaac-aaaatgacaatgaagaatgggttttaga 43601295  T
Q  201 atgaatgcttgagagaaaatacttgtgtatgttgatat 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43601294 atgaatgcttgagagaaaatacttgtgtatgttgatat 43601257  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Complemental strand, 43601609 - 43601541
Alignment:
Q  4 aatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaa 72  Q
    ||||||||||||||||||| ||||||||| | ||||||| ||||||||||| ||| |||||||||||||    
T  43601609 aatctcaaatgggtttgatgcaaaatctctatttggtgttgtttcaatgaataaaaatgagattttgaa 43601541  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 31377027 - 31377096
Alignment:
Q  4 aatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatg-aagaaagatgagattttgaa 72  Q
    ||||||||||| ||||||| ||||||||| | ||||||| ||||||||| || ||| |||||||||||||    
T  31377027 aatctcaaatgagtttgatgcaaaatctctatttggtgttgtttcaatgaaaaaaaaatgagattttgaa 31377096  T

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Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40842604 - 40842841
Alignment:
Q  1 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaagcaagtaaagaggagaaaagggcgcata 100  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  40842604 cttaatctcaaatgggtttgattcaaaatctcaagttggtgttgtttcaatgaagaaagatgagattttgaagcaggtaaagaggagaaaagggcgtata 40842703  T
Q  101 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagattgggttttaga 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40842704 aaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagactgggttttaga 40842803  T
Q  201 atgaatgcttgagagaaaatacttgtgtatgttgatat 238  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  40842804 atgaatgcttaagagaaaatacttgtgtgtgttgatat 40842841  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 7747259 - 7747327
Alignment:
Q  4 aatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaa 72  Q
    |||||||||||||||||||||||||||| || ||||||| |||||| |||| ||||||||| |||||||    
T  7747259 aatctcaaatgggtttgattcaaaatctgaacttggtgttgtttcagtgaataaagatgaggttttgaa 7747327  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 7747139 - 7747207
Alignment:
Q  1 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagatttt 69  Q
    |||||||||||||||||||| |||||||||| || ||   || ||||||||||| ||| ||||||||||    
T  7747139 cttaatctcaaatgggtttggttcaaaatctgaacttaaggttgtttcaatgaataaaaatgagatttt 7747207  T

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Target: chr8 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 36984765 - 36985002
Alignment:
Q  1 cttaatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaagcaagtaaagaggagaaaagggcgcata 100  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36984765 cttaatctcaaatgggtttgattcaaaatttcaagttggtgttgtttcaatgaagaaagatgagattttgaagcaggtaaagaggagaaaagggcgcata 36984864  T
Q  101 gaatatggtgttatttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaatgacaatgaagattgggttttaga 200  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |||||||||||    
T  36984865 gaatatggtgttctttcaatatatttggattagaaatgaaagaacaaaaagtgggaagatgaagaaggaacaaaaattaccatgaagactgggttttaga 36984964  T
Q  201 atgaatgcttgagagaaaatacttgtgtatgttgatat 238  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  36984965 atgaatgcttgagagaaaatacttgtgtatgttcatat 36985002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 36984650 - 36984718
Alignment:
Q  4 aatctcaaatgggtttgattcaaaatctcaagttggtgtggtttcaatgaagaaagatgagattttgaa 72  Q
    ||||||||||||||||||| |||||||||   ||||||| ||||||||||| ||| |||||||||||||    
T  36984650 aatctcaaatgggtttgatgcaaaatctctgtttggtgttgtttcaatgaataaaaatgagattttgaa 36984718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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