View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0608_low_38 (Length: 205)

Name: NF0608_low_38
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0608_low_38
NF0608_low_38
[»] chr7 (1 HSPs)
chr7 (58-183)||(55319-55444)
[»] chr3 (1 HSPs)
chr3 (33-183)||(33754997-33755139)


Alignment Details
Target: chr7 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 58 - 183
Target Start/End: Original strand, 55319 - 55444
Alignment:
Q  58 attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacgtatggaagaaccttcaggtgga 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  55319 attggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaatacctatggaagaaccttcaggtgga 55418  T
Q  158 catccttcaacttaagcattctttgt 183  Q
    ||||||||||||||||||||||||||    
T  55419 catccttcaacttaagcattctttgt 55444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 33754997 - 33755139
Alignment:
Q  33 tagtttttgtaagaaagttaaaatcattggctaattgaagcatcctctacagtttttcaactgtctagcaaaaaccaatctagaattgggaacctaaaat 132  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||     ||||||| ||| |||        ||| |||||    
T  33754997 tagtttttgtaagaaagttaaaatctttggctaattgaagcatcctctacagtttttcaaatgagcgacaaaaactaatatag--------acccaaaat 33755088  T
Q  133 acgtatggaagaaccttcaggtggacatccttcaacttaagcattctttgt 183  Q
    ||  |||||| |||||||||||||||| ||||||||||||| | |||||||    
T  33755089 accgatggaacaaccttcaggtggacacccttcaacttaagtactctttgt 33755139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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