View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_4 (Length: 541)
Name: NF0608_low_4
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 497; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 30 - 534
Target Start/End: Complemental strand, 34827115 - 34826611
Alignment:
| Q |
30 |
ttaataagcaaagaaatttatttgaagaaataaaaaacttacgcataagatgtgctatgctgaagtatacaataaagtctgaatcaaatttcatgaatta |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34827115 |
ttaataagcaaagaaatttatttgaagaaataaaaaacttacgcataagatgtgctatgctgaagtatacaataaagtctgaatcaaatttcatgaatta |
34827016 |
T |
|
| Q |
130 |
tgatactaaaagcaaaggaaattaaaaatactaagcctagccgctcaagactgcatacatgcaacaatgcatatgaagaaataggcagagaggagagctt |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34827015 |
tgatactaaaagcaaaggaaattaaaaatactaagcctagccgctcaagactgcatacatgcaacaatgcatatgaagaaataggcagagaggagagctt |
34826916 |
T |
|
| Q |
230 |
ggataaggtcatgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgcc |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826915 |
ggataaggtcatgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgcc |
34826816 |
T |
|
| Q |
330 |
ggttcaattcctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgg |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34826815 |
ggttcaattcctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgg |
34826716 |
T |
|
| Q |
430 |
gtaatgaagattgttctaagatgatttgagttagcttctggtttgaaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttca |
529 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
34826715 |
gtaatgaagattgttctaagatgatttgagttagcttctggtttgaacgtgagattctctaaaagtagactttctagtgtaaatgtcgaatcttccttca |
34826616 |
T |
|
| Q |
530 |
tctca |
534 |
Q |
| |
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||||| |
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| T |
34826615 |
tctca |
34826611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 532
Target Start/End: Original strand, 6843087 - 6843144
Alignment:
| Q |
475 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
532 |
Q |
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||||||||||||||||| |||| ||||||| |||||| |||||||||||||| |||| |
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| T |
6843087 |
aaagtgagattctctaagagtatactttctgatgtaaacgtcgattcttcctttatct |
6843144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 475 - 532
Target Start/End: Complemental strand, 9661908 - 9661851
Alignment:
| Q |
475 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
532 |
Q |
| |
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||||||||||||||||| |||| ||||||| || |||| |||||||||||||| |||| |
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| T |
9661908 |
aaagtgagattctctaagagtatactttctggtataaacgtcgattcttcctttatct |
9661851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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