View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_6 (Length: 427)
Name: NF0608_low_6
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 34670473 - 34670052
Alignment:
| Q |
1 |
ggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaattttg |
100 |
Q |
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| T |
34670473 |
ggctttgcgggctcgtccagttttctagggtgtaccggaacagccctcttaaggttgatgctatttctatcattaaccaacatacctacttgtaattttg |
34670374 |
T |
|
| Q |
101 |
ggagtgtatctttccttgttataacgctattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggtttgcaaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670373 |
ggagtgtatctttccttgttataacactattggacttgtccaagtcagaaacagaatgcatcaagtttggtctagtttcagttccatcaaggtttgcaaa |
34670274 |
T |
|
| Q |
201 |
atgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggattgttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34670273 |
atgtacttgagtttgattcaagggagaaagttctaccatctgctttttattagatgataacagctcattttcaaaattagaactattaaaaggattgttg |
34670174 |
T |
|
| Q |
301 |
taaattgcttcacctctcaaaagttcttcaattcctaactctgagaataacctcttccgagtattattagtcggtgtaccggtattcaactctgatatgc |
400 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34670173 |
taaattgcttcacctctcaaaagctcttcaattcctaactctgagaataacctcttccgagtattatcagtcggtgtaccggtattcaactctgatatgc |
34670074 |
T |
|
| Q |
401 |
attcagaaaagccagtattatc |
422 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
34670073 |
attcagaaaagccagtattatc |
34670052 |
T |
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