View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_7 (Length: 419)
Name: NF0608_low_7
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_7 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 235; Significance: 1e-130; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 173 - 419
Target Start/End: Original strand, 3069150 - 3069396
Alignment:
| Q |
173 |
ttgttaaaaatccaagttcttatcgtgaattgtgtttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
272 |
Q |
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| T |
3069150 |
ttgttaaaaatccaagttcttatcgtgaattgtatttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttctgcatgatat |
3069249 |
T |
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| Q |
273 |
ccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgcaacatgattt |
372 |
Q |
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| T |
3069250 |
ccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacattcaacatgattt |
3069349 |
T |
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| Q |
373 |
aaattagtaccatttggggtaagtgaagctcaacttgatcactcaat |
419 |
Q |
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| T |
3069350 |
aaattagtaccatttggggtaagtgaagcacaacttgatcactcaat |
3069396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 91 - 263
Target Start/End: Original strand, 3081879 - 3082052
Alignment:
| Q |
91 |
tcatcaaggaaaaggtgattttgaatatgattaggctttt-aagttctcagcttacagtttaatacttctgcaatatttattattgttaaaaatccaagt |
189 |
Q |
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|||| ||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||| |
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| T |
3081879 |
tcattaaggaaaaggtgattttaaatatatttaggctttttaagttctcagcttacagtttaatgcttctgcaatatttgttattgtttaaaatccaagt |
3081978 |
T |
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| Q |
190 |
tcttatcgtgaattgtgtttgtatgtgtagtacgatctaacaggaaaattgcggtctataaaacactaccttct |
263 |
Q |
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| T |
3081979 |
tctgattgtgaattgtgtttgtatgtgtagtatgatctaacaggaaaattgcggtctataaaacactaccttct |
3082052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 263 - 419
Target Start/End: Original strand, 3067037 - 3067186
Alignment:
| Q |
263 |
tgcatgatatccaagagaatagcagactaattgcttcaaagttgaaggagaagaaattcacaatttctaagctattgatctccaaatgttgtcaacatgc |
362 |
Q |
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| T |
3067037 |
tgcatgatatccaagagaataacagaataattgcttcaaggttgaaggagaagaacttcaccatctctaagctattgatctccaaatgttgt-------c |
3067129 |
T |
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| Q |
363 |
aacatgatttaaattagtaccatttggggtaagtgaagctcaacttgatcactcaat |
419 |
Q |
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| T |
3067130 |
aacatgatttaaattagtaccatttggggtaagcgaagcacaacttgatcactcaat |
3067186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 3068683 - 3068773
Alignment:
| Q |
91 |
tcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaatatttattattgttaaaa |
181 |
Q |
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| T |
3068683 |
tcatcaaggaaaaggtgattttgaatatgattaggcttttaagttctcagcttacagtttaatacttctgcaatatttattattgttaaaa |
3068773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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