View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_8 (Length: 416)
Name: NF0608_low_8
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Original strand, 47002754 - 47003127
Alignment:
| Q |
30 |
aaaaccaggtctaaaacaactcgatctgttatgcatataacatgaactattaatttaattatcaactgacctgcctgttttctatgtatcacaggtttct |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002754 |
aaaaccaggtctaaaacaactcgatctgttatgcatataacatgaactattaatttaattatcaactgacctgcctgttttctatgtatcacaggtttct |
47002853 |
T |
|
| Q |
130 |
ccaacctacaaagaattgccattggacttttgttgtcgacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgt |
229 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002854 |
ccaacctacaaaggattgccattggacttttgttgtcgacaatcggaatggcagctgcttctctgattgaagtgaaacggttgtcagtggcaaaaggtgt |
47002953 |
T |
|
| Q |
230 |
aaaaggcaaccaaacaacactaccaattagtgttttccttctagtcccacaattcttcttggttggttctggtgaagcattcatatacacaggacaactt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47002954 |
aaaaggcaaccaaacaacactaccaattagtgttttccttctagtcccgcaattcttcttggttggttctggtgaagcattcatatacacaggacaactt |
47003053 |
T |
|
| Q |
330 |
gatttcttcataacacaatcaccaaaaggaatgaaaacaatgagcactggtctcttcctaacaactttatccct |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47003054 |
gatttcttcataacacaatcaccaaaaggaatgaaaacaatgagcactggtctcttcctaacaactttatccct |
47003127 |
T |
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