View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0608_low_9 (Length: 405)
Name: NF0608_low_9
Description: NF0608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0608_low_9 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 405
Target Start/End: Complemental strand, 32166158 - 32165759
Alignment:
| Q |
5 |
caaatctcacatttggagttcatagaaatcatgggaaagattgtatcactaaaaatccattgacatatatcccagaaatcagaattagagcaatattgat |
104 |
Q |
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| T |
32166158 |
caaatctcacatttggagttcatagaaatcatggaaaagattgtatcactaaaaatccattgacatatatcccagaaatcagaattagagcaatattgat |
32166059 |
T |
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| Q |
105 |
aggagtgaattgtatattatcattagcttacaaaataatcttgatctttacttctttcaatatttatctctatcttgttgtatactaaattacccacaac |
204 |
Q |
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| T |
32166058 |
aggagtgaattgtatattatcattagcttacaaaataatcttgatctttacttctttcaatatttatctctatcttgttgtatactaaattacccacaac |
32165959 |
T |
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| Q |
205 |
ttgtatctttcattaagatctctctctttcctatccccaaacttgcaaatggcgatatagatttagtaatttaaatctagatctttcatttgacttatgt |
304 |
Q |
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| T |
32165958 |
ttgtatctttcattaagatctctctctttcctatccccaaacttgcaaatggcgatatagatttagtaatttaaatctagatctttcatttgacttatgt |
32165859 |
T |
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| Q |
305 |
ttccatggggaatgctaacaagtagcagcannnnnnnnccttccataagtttactttactaaatgtaatcttatatgaaacgtggtcaaatattaaatgt |
404 |
Q |
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|||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
32165858 |
ttccat-gggaatgctaacaagtagcagcattttttttccttccataagtttactttactaaatgtaatcttatatgaaacatggtcaaatattaaatgt |
32165760 |
T |
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