View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0609_low_2 (Length: 428)
Name: NF0609_low_2
Description: NF0609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0609_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 30 - 356
Target Start/End: Original strand, 27745346 - 27745671
Alignment:
| Q |
30 |
attgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaagagtaatgtgtaaacatggtgactaagaaaatatcgttcttttttc |
129 |
Q |
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| T |
27745346 |
attgtatcattctgtaagtattgcatggtgttccaagcttactttaacactgaagagtaatgtgtaaacatggagactta-aaaatatcgttcttttttc |
27745444 |
T |
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| Q |
130 |
ttcttcctacctttcttgtcgtgtagcaaacgatcattgtggtctattatatgttttagtgtcacacatgctttgtttgatagacattacactccttaaa |
229 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27745445 |
ttcttcatacctttcttgtcgtgtagcaaacgatcattgtggtctattatatgttttagtgtcacacatgctttgtttgatagacattacactccttaaa |
27745544 |
T |
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| Q |
230 |
acacatggtaagcaatcaagacacgtataattcatattattgtatttttgtctgcagcatggattttttaactgtaatgatgatagatatacttgcatcc |
329 |
Q |
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| T |
27745545 |
acacatggtaagcaatcaagacatgtataattcatattattgtatttttgtctgcagcatggattttttaactgtaatgatggtagatatacttgcatcc |
27745644 |
T |
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| Q |
330 |
ccaatgtatatcttagaatatttaatc |
356 |
Q |
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| T |
27745645 |
ccaatgtatatcttagaatatttaatc |
27745671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 49513725 - 49513833
Alignment:
| Q |
41 |
ctgtaagtattgcatggtgttccaagcttactttaacactgaagagtaatgtgtaaacatggtgactaagaaaatatcgttcttttttcttcttcctacc |
140 |
Q |
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| T |
49513725 |
ctgtaagtattgcatgatgttccaaacatactttaacactcaaaagtaatgtgtaaacatggtgaataagacaacatcattcttttttcttcttcctacc |
49513824 |
T |
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| Q |
141 |
tttcttgtc |
149 |
Q |
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||| ||||| |
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| T |
49513825 |
ttttttgtc |
49513833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 348
Target Start/End: Original strand, 49514024 - 49514088
Alignment:
| Q |
284 |
cagcatggattttttaactgtaatgatgatagatatacttgcatccccaatgtatatcttagaat |
348 |
Q |
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|||||| ||||||||| | |||| ||||||| |||||| | |||| |||||||||||||||||| |
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| T |
49514024 |
cagcatagattttttatccgtaacgatgataagtatactcgtatccgcaatgtatatcttagaat |
49514088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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