View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0609_low_4 (Length: 293)
Name: NF0609_low_4
Description: NF0609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0609_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 33950041 - 33949757
Alignment:
| Q |
1 |
atccgtcaaataattcaactacaaatattagatttgatacatcaaagaatttcactacactcattttaac--actctctctaacgttcattctcatttat |
98 |
Q |
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|||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||| | ||||||||| | ||||||||||| | | |
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| T |
33950041 |
atccgtcaaataattcaactacaaatattagattagatgcatcaaagaattacactacactctttttagcgcactctctcttatattcattctcatattt |
33949942 |
T |
|
| Q |
99 |
gtgaaactcatatgagttttacaactttatgtgtgatctatttctaatatatggtacttacatgaattttatccattaaaaaagtagatatttaagaaaa |
198 |
Q |
| |
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|||| ||||||||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
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| T |
33949941 |
gtgacactcatatgggtttcacaactttatgtatgatctatttctaatatatggtatttacatgaattttatccattaaaaaaatagatatttaagaaaa |
33949842 |
T |
|
| Q |
199 |
tgtagaaagagagtg-tttatagtactcatctacaatataataaggtacccaaccaatcacttttaagtcatttatgctattcat |
282 |
Q |
| |
|
||||||||||||||| ||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33949841 |
tgtagaaagagagtgttttatagcactcctctacaatagaataaggtacccaaccaatcacttttaagtcatttatgctattcat |
33949757 |
T |
|
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