View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0609_low_8 (Length: 271)

Name: NF0609_low_8
Description: NF0609
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0609_low_8
NF0609_low_8
[»] scaffold0177 (2 HSPs)
scaffold0177 (25-168)||(18596-18739)
scaffold0177 (107-240)||(18467-18615)
[»] chr4 (2 HSPs)
chr4 (25-121)||(15473391-15473487)
chr4 (153-240)||(15473299-15473386)
[»] chr8 (2 HSPs)
chr8 (25-168)||(21290192-21290320)
chr8 (166-216)||(21290333-21290383)
[»] scaffold0422 (1 HSPs)
scaffold0422 (25-117)||(13559-13651)
[»] scaffold1078 (2 HSPs)
scaffold1078 (25-168)||(2563-2691)
scaffold1078 (167-205)||(2511-2549)
[»] chr1 (4 HSPs)
chr1 (25-117)||(19168499-19168591)
chr1 (111-168)||(19168463-19168520)
chr1 (25-131)||(20881960-20882066)
chr1 (25-61)||(23068784-23068820)
[»] scaffold0007 (1 HSPs)
scaffold0007 (25-131)||(57417-57523)
[»] chr6 (3 HSPs)
chr6 (25-58)||(11237488-11237521)
chr6 (25-61)||(19285415-19285451)
chr6 (25-53)||(18544948-18544976)
[»] scaffold0752 (1 HSPs)
scaffold0752 (25-61)||(3844-3880)
[»] scaffold0414 (1 HSPs)
scaffold0414 (25-59)||(5372-5406)
[»] scaffold0080 (1 HSPs)
scaffold0080 (25-131)||(1195-1301)
[»] scaffold0537 (1 HSPs)
scaffold0537 (25-54)||(2904-2933)
[»] chr3 (4 HSPs)
chr3 (106-139)||(17008141-17008174)
chr3 (106-139)||(17018947-17018980)
chr3 (28-108)||(17008078-17008158)
chr3 (28-108)||(17018884-17018964)


Alignment Details
Target: scaffold0177 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 18739 - 18596
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||||  || ||||||||||||||||||    
T  18739 cagagacatctgatgagatcataggttctgattcagataaggtttctgaggtgggtcgctcataagcaatttgttcagaaatagtgtgttcaggaacaga 18640  T
Q  125 ttgttcataggggttttgttcagaagtgtgttcaggaacaactt 168  Q
    || |||| |||||||| |||||||||||||||||||||| ||||    
T  18639 ttattcagaggggtttcgttcagaagtgtgttcaggaacgactt 18596  T

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Target: scaffold0177; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 18615 - 18467
Alignment:
Q  107 agtgtgttcaggaacagattgttcataggggttttgttcagaagtgtgttcaggaacaactt---------------cttggttcaaggttgagggttca 191  Q
    |||||||||||||||   ||||||| ||||||||||||||||||||||||||||||| ||||               |||||||||||||||| ||||||    
T  18615 agtgtgttcaggaacgacttgttcagaggggttttgttcagaagtgtgttcaggaacgacttgatcaggaacagtttcttggttcaaggttgatggttca 18516  T
Q  192 ggcattttagtttgttgctttgtatgtgtttgaatgttcacaggttctg 240  Q
    ||||||||||||| ||| ||||||||| ||||||||||||  |||||||    
T  18515 ggcattttagttttttggtttgtatgtctttgaatgttcattggttctg 18467  T

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Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 15473487 - 15473391
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaac 121  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||| ||| |||||||||||||||    
T  15473487 cagagacatctgatgtgatcataggttctgattcagataaggtttctgaggtgggttgctcagaagcaatttgttcaggaatagtgtgttcaggaac 15473391  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 153 - 240
Target Start/End: Complemental strand, 15473386 - 15473299
Alignment:
Q  153 tgttcaggaacaacttcttggttcaaggttgagggttcaggcattttagtttgttgctttgtatgtgtttgaatgttcacaggttctg 240  Q
    |||||| ||||| |||||||||||||||||||||||||| | |||| ||||||||| ||||| ||||||| ||||||||| |||||||    
T  15473386 tgttcaagaacagcttcttggttcaaggttgagggttcatggatttcagtttgttgatttgtgtgtgtttaaatgttcactggttctg 15473299  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 168
Target Start/End: Original strand, 21290192 - 21290320
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    ||||||||||||||| ||||||||||| ||||||||| |||||| || |||||| ||||||| |||||||||||||||               |||||||    
T  21290192 cagagacatctgatgtgatcataggttatgattcagataaggttcctaaggtgggttgctcagaagcaatttgttcaa---------------gaacaga 21290276  T
Q  125 ttgttcataggggttttgttcagaagtgtgttcaggaacaactt 168  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  21290277 ttgttcagaggggttttgttcagaagtgtgttcaggaacaactt 21290320  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 216
Target Start/End: Original strand, 21290333 - 21290383
Alignment:
Q  166 cttcttggttcaaggttgagggttcaggcattttagtttgttgctttgtat 216  Q
    ||||||||||||||||||| |||||||| || | ||||||||| |||||||    
T  21290333 cttcttggttcaaggttgacggttcagggatgtcagtttgttggtttgtat 21290383  T

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Target: scaffold0422 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0422
Description:

Target: scaffold0422; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 25 - 117
Target Start/End: Original strand, 13559 - 13651
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcag 117  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| |||| | |||||||||| ||||||||||| ||||||  |||||||    
T  13559 cagagacatctgatgagatcataggttctgattcagatagggtttctaaggttggttgctcataaacaatttgttcaggaacagattgttcag 13651  T

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Target: scaffold1078 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold1078
Description:

Target: scaffold1078; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 2691 - 2563
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| |  ||| | ||||||| ||               ||||| |||||||||| |||    
T  2691 cagagacatctgatgagatcataggttctgattcagataaggtttttagggttggttgctcagaa---------------acagtttgttcaggaataga 2607  T
Q  125 ttgttcataggggttttgttcagaagtgtgttcaggaacaactt 168  Q
    ||||||| |||||||||||||||||||| |||||||||||||||    
T  2606 ttgttcagaggggttttgttcagaagtgagttcaggaacaactt 2563  T

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Target: scaffold1078; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 205
Target Start/End: Complemental strand, 2549 - 2511
Alignment:
Q  167 ttcttggttcaaggttgagggttcaggcattttagtttg 205  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  2549 ttcttggttaaaggttgagggttcaggcatttcagtttg 2511  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 117
Target Start/End: Complemental strand, 19168591 - 19168499
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcag 117  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||||  ||| | ||||||| || ||||||||||| ||||||  |||||||    
T  19168591 cagagacatctgatgagatcataggttctgattgagataaggtttctagggttggttgctcagaaacaatttgttcaggaacagattgttcag 19168499  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Complemental strand, 19168520 - 19168463
Alignment:
Q  111 tgttcaggaacagattgttcataggggttttgttcagaagtgtgttcaggaacaactt 168  Q
    ||||||||||||||||||||| |||||||||||||||||| |  |||| |||||||||    
T  19168520 tgttcaggaacagattgttcagaggggttttgttcagaagagatttcaagaacaactt 19168463  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 20882066 - 20881960
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||| ||| ||   |||||   |||| | ||||||| || || |||||||| ||||||   ||||| ||||| |    
T  20882066 cagagacatctgatgagatcataggttctggttctgattgggtttgaaaggtaggttgctcagaaacagtttgttcaggaacagatagttcaagaacaaa 20881967  T
Q  125 ttgttca 131  Q
    |||||||    
T  20881966 ttgttca 20881960  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 23068784 - 23068820
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcaga 61  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  23068784 cagagacatctgatgagatcattggttctggttcaga 23068820  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 131
Target Start/End: Complemental strand, 57523 - 57417
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||| ||| ||   ||||||   ||| | ||||||| || || ||| |||||||||||   ||||||||||| |    
T  57523 cagagacatctgatgagatcataggttctggttctgattgggtttcaagggtaggttgctcagaaacagttttttcaagaacagatagttcaggaacaaa 57424  T
Q  125 ttgttca 131  Q
    |||||||    
T  57423 ttgttca 57417  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 11237488 - 11237521
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattc 58  Q
    ||||||||||||||||||||||||||||||||||    
T  11237488 cagagacatctgatgagatcataggttctgattc 11237521  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 19285451 - 19285415
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcaga 61  Q
    |||||||||||||||||||||||||||||| ||||||    
T  19285451 cagagacatctgatgagatcataggttctggttcaga 19285415  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 53
Target Start/End: Original strand, 18544948 - 18544976
Alignment:
Q  25 cagagacatctgatgagatcataggttct 53  Q
    |||||||||||||||||||||||||||||    
T  18544948 cagagacatctgatgagatcataggttct 18544976  T

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Target: scaffold0752 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0752
Description:

Target: scaffold0752; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 3844 - 3880
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcaga 61  Q
    |||||||||||||||||||||||||||||| ||||||    
T  3844 cagagacatctgatgagatcataggttctggttcaga 3880  T

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Target: scaffold0414 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0414
Description:

Target: scaffold0414; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 5406 - 5372
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattca 59  Q
    ||||||||||||||| |||||||||||||||||||    
T  5406 cagagacatctgatgtgatcataggttctgattca 5372  T

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Target: scaffold0080 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 1195 - 1301
Alignment:
Q  25 cagagacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacagtgtgttcaggaacaga 124  Q
    |||||||||||||||||||||||||||||| ||| ||   ||||||  | || | ||||||| || ||||||||||| | ||||   |||||||||||      
T  1195 cagagacatctgatgagatcataggttctggttctgattgggtttcaaatgtaggttgctcagaaacaatttgttcagggacagatagttcaggaacaat 1294  T
Q  125 ttgttca 131  Q
    |||||||    
T  1295 ttgttca 1301  T

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Target: scaffold0537 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0537
Description:

Target: scaffold0537; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Complemental strand, 2933 - 2904
Alignment:
Q  25 cagagacatctgatgagatcataggttctg 54  Q
    ||||||||||||||||||||||||||||||    
T  2933 cagagacatctgatgagatcataggttctg 2904  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 17008141 - 17008174
Alignment:
Q  106 cagtgtgttcaggaacagattgttcataggggtt 139  Q
    ||||||||||||||||||||||||||||| ||||    
T  17008141 cagtgtgttcaggaacagattgttcatagaggtt 17008174  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 17018947 - 17018980
Alignment:
Q  106 cagtgtgttcaggaacagattgttcataggggtt 139  Q
    ||||||||||||||||||||||||||||| ||||    
T  17018947 cagtgtgttcaggaacagattgttcatagaggtt 17018980  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 17008078 - 17008158
Alignment:
Q  28 agacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacag 108  Q
    ||||||||||||||||||| ||||||| |||||| || ||||||  ||| | ||||||| || || | |||||| ||||||    
T  17008078 agacatctgatgagatcattggttctggttcagataaagtttctagggttggttgctcagaaccagtgtgttcaggaacag 17008158  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 17018884 - 17018964
Alignment:
Q  28 agacatctgatgagatcataggttctgattcagacaaggtttctgaggtggtttgctcataagcaatttgttcaagaacag 108  Q
    ||||||||||||||||||| ||||||| |||||| || ||||||  ||| | ||||||| || || | |||||| ||||||    
T  17018884 agacatctgatgagatcattggttctggttcagataaagtttctagggttggttgctcagaaccagtgtgttcaggaacag 17018964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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