View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_high_11 (Length: 415)
Name: NF0610_high_11
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_high_11 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 174 - 415
Target Start/End: Complemental strand, 47904207 - 47903975
Alignment:
| Q |
174 |
tacataccaatgacacacaatcaattagggtttcataaaataaaattttcataaatactaatataatttgacttgctctatgaaacaggagttgtgttta |
273 |
Q |
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| T |
47904207 |
tacataccaatgacacgcaatcaattagggtttcataaaataaaattttcataaacactaatataatttgacttgctctaagaaaggggagttgtgtt-- |
47904110 |
T |
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| Q |
274 |
accgaaggatttagacattcataatatggtaaacaaatttgaatcattgttgaaagacgtattcatatttagtgcctgacacatccttaatagaattatc |
373 |
Q |
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| T |
47904109 |
-------gatttagacattcataatatggtaaacaaatttgaatcattgttgaaagacgtattcatatttagtgtctgacacatctttaatagaattatc |
47904017 |
T |
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| Q |
374 |
tctagtnnnnnnnttaatgagaaacgaacaaactaataaatt |
415 |
Q |
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| T |
47904016 |
tctagtaaaaaaattaatgggaaacgaacaaactaataaatt |
47903975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 47904421 - 47904319
Alignment:
| Q |
1 |
tgcatctacattaaaagggacatacttataaaaatgttatttgggctaaatctttaaaaaagagagaagttaaaagggtcaaacttccaggcattggttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
47904421 |
tgcatctacattaaaagggacatacttataaaaatgttatttgggctaaatctttaaaaaagagagaaattaaaagggtcaaacttccaggcattggttt |
47904322 |
T |
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| Q |
101 |
ttt |
103 |
Q |
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||| |
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| T |
47904321 |
ttt |
47904319 |
T |
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