View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_high_14 (Length: 324)
Name: NF0610_high_14
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 28147149 - 28146817
Alignment:
| Q |
1 |
attcaatatgaaactcttaacacaagttcaattgttcaaattaatttaactgctaaaaaa-caaacgcatctgtattaaatatacatacttttattgttt |
99 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |
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| T |
28147149 |
attcaatatgaaactcttaacacatgttcaattgttcaaattaatttaactgctaaaaaaacaaacgcgtctgtattaaatatacatacttttattgttt |
28147050 |
T |
|
| Q |
100 |
atatcaaatgtacgtactac----------------caccatctccatgttcaatttctt--gtttcttcaccttcttagaggccaaataagtttgagat |
181 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
28147049 |
atatcaaatgtacgtactactaatcaccatcaccatcaccatctccatgttcaatttcttttgtttcttcaccttcttagaggccaaataagttagagat |
28146950 |
T |
|
| Q |
182 |
atcataaggaaaagaaaacaaagaataatctgtcatctataattacaatgcaaactagaattctattaaaattgataatgaacatgtcaacttaaccact |
281 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
28146949 |
atcataaggaaaagaaaacaaacaataatctgtcatctataattacaatgcaaactagaattctattaaaattgaaaatgaacatgtcaacttaaccact |
28146850 |
T |
|
| Q |
282 |
aaatggaagctataacattaatatctacctatg |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
28146849 |
aaatggaagctataacattaatatctacctatg |
28146817 |
T |
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