View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_high_19 (Length: 259)
Name: NF0610_high_19
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 5161388 - 5161224
Alignment:
| Q |
15 |
tgttgcagatgtccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagt |
114 |
Q |
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| T |
5161388 |
tgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagt |
5161289 |
T |
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| Q |
115 |
aatcattgtgctttgttctgaactccacttccaagtgtagttcaccatgggatgattcaaataaa |
179 |
Q |
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| T |
5161288 |
aatcattgtgctttgttctgaactccacttccaagtgtagttcgccatgagataattcaaataaa |
5161224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 5197059 - 5196930
Alignment:
| Q |
26 |
tccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgc |
125 |
Q |
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| T |
5197059 |
tccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgc |
5196960 |
T |
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| Q |
126 |
tttgttctgaactccacttccaagtgtagt |
155 |
Q |
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| T |
5196959 |
tttgttctgaactccacttccaaatgtagt |
5196930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 157
Target Start/End: Complemental strand, 5174318 - 5174187
Alignment:
| Q |
26 |
tccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgc |
125 |
Q |
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| T |
5174318 |
tccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatattctctagaactatacccttgtaagagtattcattgtgc |
5174219 |
T |
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| Q |
126 |
tttgttctgaactccacttccaagtgtagttc |
157 |
Q |
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| T |
5174218 |
tttgttctgaactccacttcaaattgtagttc |
5174187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 4855711 - 4855838
Alignment:
| Q |
27 |
ccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgct |
126 |
Q |
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| T |
4855711 |
ccaatttgagaagggatgacacctgttaggttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgct |
4855810 |
T |
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| Q |
127 |
ttgttctgaactccacttccaagtgtag |
154 |
Q |
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| T |
4855811 |
ttgttctgaactccacttcaaattgtag |
4855838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 5215203 - 5215088
Alignment:
| Q |
27 |
ccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgct |
126 |
Q |
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| T |
5215203 |
ccaatttgagaagggatgagacctgttaggttattccatgataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgct |
5215104 |
T |
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| Q |
127 |
ttgttctgaactccac |
142 |
Q |
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| T |
5215103 |
ttgttctgaactccac |
5215088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 154
Target Start/End: Original strand, 4841204 - 4841332
Alignment:
| Q |
26 |
tccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgc |
125 |
Q |
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||||||||| |||||||| ||||||| || |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| ||||||||| |
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| T |
4841204 |
tccaatttgggaagggataacacctgttaaattattgcatgataaatccaatccagtcataatctctagaactttacccttgtaaaagtattcattgtgc |
4841303 |
T |
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| Q |
126 |
tttgttctgaactccacttccaagtgtag |
154 |
Q |
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|||||||| ||||||||||| || ||||| |
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| T |
4841304 |
tttgttctaaactccacttcaaattgtag |
4841332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 145
Target Start/End: Complemental strand, 5183660 - 5183541
Alignment:
| Q |
26 |
tccaatttgagaagggatcgtgcctgttagcttgttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgc |
125 |
Q |
| |
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|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| ||| ||| |||| |||||||||||||||| |||| |
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| T |
5183660 |
tccaatttgagaagggatgacacctgttagcttattgcatgataaatccaatccagtcatgatctttagaactatacccttgtaaaagtaatcatagtgc |
5183561 |
T |
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| Q |
126 |
tttgttctgaactccacttc |
145 |
Q |
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|||||||| |||| |||||| |
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| T |
5183560 |
tttgttctaaactgcacttc |
5183541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 90 - 153
Target Start/End: Complemental strand, 5203715 - 5203648
Alignment:
| Q |
90 |
tctaggactttacctttgtaaaagtaatc----attgtgctttgttctgaactccacttccaagtgta |
153 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||| |
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| T |
5203715 |
tctaggactttacctttgtaaaagtaatcattgattgtgctttgttctgaactctacttccaaatgta |
5203648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 138
Target Start/End: Complemental strand, 7143489 - 7143411
Alignment:
| Q |
60 |
ttgcatgataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgctttgttctgaact |
138 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||| | | ||||||||| |||| || ||||||||| |||| |
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| T |
7143489 |
ttgcatgataaatccaatccagtcatcatctctaggattttagcgtcgtaaaagtactcatagttctttgttctaaact |
7143411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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