View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_high_28 (Length: 203)

Name: NF0610_high_28
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_high_28
NF0610_high_28
[»] chr8 (1 HSPs)
chr8 (27-110)||(39566866-39566948)
[»] chr5 (2 HSPs)
chr5 (27-110)||(4922057-4922139)
chr5 (48-93)||(8568610-8568655)
[»] chr7 (2 HSPs)
chr7 (32-110)||(25102276-25102354)
chr7 (27-94)||(36030932-36031000)
[»] chr4 (2 HSPs)
chr4 (27-110)||(14062111-14062193)
chr4 (27-110)||(29696679-29696761)
[»] chr3 (1 HSPs)
chr3 (27-110)||(50406650-50406732)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 1e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 39566948 - 39566866
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  39566948 tgtcattttacaagtatacttctttctttcctctcactttctattcactttcacttcaaccaaacaa-ccgcaaaatcatatca 39566866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 8e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 4922057 - 4922139
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    |||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4922057 tgtcattttataagtatacttctttcttttttctcattttctattcactttcacttcaaccaaacaa-ccacaaaatcatatca 4922139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 93
Target Start/End: Original strand, 8568610 - 8568655
Alignment:
Q  48 ctttctttcctctcaatttctattcactttcacttcaaccaaacaa 93  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  8568610 ctttctttcctttcactttctattcactttcacttctaccaaacaa 8568655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 32 - 110
Target Start/End: Original strand, 25102276 - 25102354
Alignment:
Q  32 ttttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25102276 tttttcaagtatacatctttctttcctctcattttctattcactttcacttcaaccaaacaaaccagaaaatcatatca 25102354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 94
Target Start/End: Original strand, 36030932 - 36031000
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcactt-caaccaaacaac 94  Q
    |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  36030932 tgtcattttataaatatacttctttctttcttctcactttctattcactttcacttaaaaccaaacaac 36031000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 14062111 - 14062193
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14062111 tgtcattttataagtatacttctttctgtcctctcattttctattcactttcactacaaacaaacaa-ccacaaaatcatatca 14062193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 29696761 - 29696679
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29696761 tgtcattttataaatatacttttttctttcctctcactttctattcactttcacttcaaccaaacaa-ccataaaatcatatca 29696679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 110
Target Start/End: Original strand, 50406650 - 50406732
Alignment:
Q  27 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 110  Q
    ||||||||||||| ||||  ||||||||| |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  50406650 tgtcattttacaaatatatctctttcttttctctcattttctattctctttcacttaaaccaaacaa-ccacaaaatcatatca 50406732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2798 times since January 2019
Visitors: 3829