View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_high_5 (Length: 583)
Name: NF0610_high_5
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_high_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 583
Target Start/End: Complemental strand, 30055493 - 30054905
Alignment:
| Q |
1 |
catattcatcctgttgttccggtcttagaaccggtttaagtgcagagaaaccggattattattagttccaagaacagtgaccttatcagtcattctgcta |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
30055493 |
catatacatcctgttgttccggtcttagaaccggtttaagtgcagagaaaccggattatta---gttccaagaacagtgaccttatcattcattctgcta |
30055397 |
T |
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| Q |
101 |
ctctcgatcgattttactctgtagcaatgattcttgttccacacaaacccaaaaggaagaagaagagaactgaaaagaagacaga--------------- |
185 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30055396 |
ctctcgatcgattttactctgtagcaatgattcttgttccacacaaacccaaaaggaagaagaagagaactgaaaagaagacagactcagcaatttacca |
30055297 |
T |
|
| Q |
186 |
-------ttatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttc |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30055296 |
gattccattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttc |
30055197 |
T |
|
| Q |
279 |
caacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccactccactcca |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30055196 |
caacccttagattaacttccaaacccttcaactccatccacactttcaccgaatcactctctcgaatcctgtctcttcgcgatgattccactccactcca |
30055097 |
T |
|
| Q |
379 |
cactctcgagtttcttgacaaagaggtttccgtggaaccccgaatactgaatagtatcgtagaatacgctgtttcacatagtgtccaggtattacgaatt |
478 |
Q |
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| T |
30055096 |
cactctcgagtttcttgacaaagaggttttcgtggaaccccgaatactgaatagtatcgtagaatacgctgt----caaattcacca---------actt |
30055010 |
T |
|
| Q |
479 |
ccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattggagtatttaacaaagtatacttccccaactctctta |
578 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30055009 |
ccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcacgttcgtattgtagtatttaacaaagtatacttccccaactctctta |
30054910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 185 - 280
Target Start/End: Complemental strand, 8400584 - 8400489
Alignment:
| Q |
185 |
attatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttcca |
280 |
Q |
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||||||||| |||||||||| |||||||| || ||||||| |||||||||||| |||||||||||||||||| | |||||||||| ||||||||| |
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| T |
8400584 |
attatccatcacattctctccttcttgaaaaccaaagaagtttttcaaacttgtgtactctcaacaagatggatccatctcacaaaacatcttcca |
8400489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 5367622 - 5367737
Alignment:
| Q |
184 |
gattatccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacc |
283 |
Q |
| |
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|||| ||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||||| |||||| |
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| T |
5367622 |
gattctccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatctaccaacc |
5367721 |
T |
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| Q |
284 |
cttagattaacttcca |
299 |
Q |
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|||||||||| ||||| |
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| T |
5367722 |
cttagattaagttcca |
5367737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 5362411 - 5362521
Alignment:
| Q |
189 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
288 |
Q |
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||||| |||||||||| || ||| |||| ||||||||||||||||||||||||||||| | | ||||||| |||| |||| ||| ||||||| ||||| |
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| T |
5362411 |
tccatcacattctctccttattggacaccaaagaagcttttcaaacttgcatactctccaaacgatggaagaatctaccaaaccatattccaactcttag |
5362510 |
T |
|
| Q |
289 |
attaacttcca |
299 |
Q |
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||||| ||||| |
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| T |
5362511 |
attaagttcca |
5362521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 189 - 293
Target Start/End: Original strand, 5374181 - 5374285
Alignment:
| Q |
189 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
288 |
Q |
| |
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||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||| ||||||||||||| |
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| T |
5374181 |
tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaccatattccaacccttag |
5374280 |
T |
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| Q |
289 |
attaa |
293 |
Q |
| |
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||||| |
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| T |
5374281 |
attaa |
5374285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 477 - 532
Target Start/End: Complemental strand, 8400262 - 8400207
Alignment:
| Q |
477 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattcac |
532 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
8400262 |
ttccatctttcttattttcatctcaaactttaacttctcttcacctttctcttcac |
8400207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 189 - 299
Target Start/End: Original strand, 5355979 - 5356089
Alignment:
| Q |
189 |
tccatgacattctctcattcttgaacactaaagaagcttttcaaacttgcatactctcaacaagatggaactatctcacaaagcatcttccaacccttag |
288 |
Q |
| |
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||||| |||||||||| || || |||| ||| ||||||||||||||| ||||||||| || |||||||| ||||| |||| ||||| |||||||||| |
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| T |
5355979 |
tccatcacattctctccttattagacaccaaacaagcttttcaaacttccatactctccactagatggaagaatctcccaaaacatctctcaacccttag |
5356078 |
T |
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| Q |
289 |
attaacttcca |
299 |
Q |
| |
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||||| ||||| |
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| T |
5356079 |
attaagttcca |
5356089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 531
Target Start/End: Original strand, 5368748 - 5368802
Alignment:
| Q |
477 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
531 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5368748 |
ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5368802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 531
Target Start/End: Original strand, 5374505 - 5374559
Alignment:
| Q |
477 |
ttccatcttgcttattttcatctcaaactttaacttctcttgacctttctattca |
531 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| || ||||||||||||||||| |
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| T |
5374505 |
ttccgtcttgcttattttcatctcaaactttaacgtcacttgacctttctattca |
5374559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 486 - 532
Target Start/End: Original strand, 5367951 - 5367997
Alignment:
| Q |
486 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
532 |
Q |
| |
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||||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
5367951 |
gcttattttcatctcaaaccttaacgtctcttgacctttctattcac |
5367997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 532
Target Start/End: Original strand, 5362735 - 5362781
Alignment:
| Q |
486 |
gcttattttcatctcaaactttaacttctcttgacctttctattcac |
532 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||| |||||| |
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| T |
5362735 |
gcttattttcatctcaaaccttaacgtctcttgacctttccattcac |
5362781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 8400695 - 8400655
Alignment:
| Q |
118 |
tctgtagcaatgattcttgttccacacaaacccaaaaggaa |
158 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||| |
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|
| T |
8400695 |
tctgcagcaatgattcttcttccacacaaacccaaaaggaa |
8400655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 524
Target Start/End: Complemental strand, 30597999 - 30597955
Alignment:
| Q |
480 |
catcttgcttattttcatctcaaactttaacttctcttgaccttt |
524 |
Q |
| |
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|||||||||| ||||||| ||| |||||||| ||||||||||||| |
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| T |
30597999 |
catcttgctttttttcatgtcacactttaacctctcttgaccttt |
30597955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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