View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_high_6 (Length: 461)

Name: NF0610_high_6
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_high_6
NF0610_high_6
[»] chr5 (10 HSPs)
chr5 (220-432)||(34241328-34241538)
chr5 (11-175)||(34241583-34241747)
chr5 (244-432)||(34233555-34233743)
chr5 (287-432)||(42128052-42128203)
chr5 (265-433)||(42116871-42117058)
chr5 (245-432)||(42122614-42122808)
chr5 (245-432)||(41714285-41714465)
chr5 (282-432)||(41572781-41572929)
chr5 (304-432)||(41618420-41618549)
chr5 (125-175)||(34234338-34234388)
[»] chr2 (4 HSPs)
chr2 (245-432)||(11995166-11995353)
chr2 (280-432)||(12247609-12247764)
chr2 (277-339)||(32682495-32682557)
chr2 (393-432)||(32682456-32682495)
[»] chr4 (1 HSPs)
chr4 (268-432)||(11117294-11117465)
[»] chr8 (1 HSPs)
chr8 (268-305)||(30021068-30021105)
[»] chr3 (2 HSPs)
chr3 (277-353)||(8522263-8522340)
chr3 (380-432)||(8522379-8522431)


Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 220 - 432
Target Start/End: Complemental strand, 34241538 - 34241328
Alignment:
Q  220 ctagatcaaataagaatgagtcgatagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccaga 319  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  34241538 ctagatcaaataagaatgagtcgatagattgtcaaactcacatcaaaacttattttaaacaga--gtaaaaactaacacacaatagagaaaataaccaga 34241441  T
Q  320 ataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccacca 419  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34241440 ataataaaactatgacatttgcaccatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccacca 34241341  T
Q  420 aatatcatcacaa 432  Q
    |||||||||||||    
T  34241340 aatatcatcacaa 34241328  T

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Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 34241747 - 34241583
Alignment:
Q  11 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctgggaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34241747 gatgaagtataataacacagaatcaaaaactctaactccattttcatcctggaaaatccaaaacatgaatgaaatgctcatgctgctgcctgctagtgtt 34241648  T
Q  111 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241647 ggactttctgggcatttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 34241583  T

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Target: chr5; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 244 - 432
Target Start/End: Complemental strand, 34233743 - 34233555
Alignment:
Q  244 tagattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacaca--atagagaaaataaccagaataataaaactatgacatttgc 341  Q
    |||||||| ||||||||| ||||||||||||||||||||  |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  34233743 tagattgttacactcacaccaaaacttattttaaacaga--gtaaaaactaacacacacaatagagaaaataaccagaataataaaactatgacatttgc 34233646  T
Q  342 accatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34233645 accatctgattcatggttggaccattgtttctcctcacttatgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 34233555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 287 - 432
Target Start/End: Original strand, 42128052 - 42128203
Alignment:
Q  287 aaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacca------tcttattcatggttggaccattgtttctcctcact 380  Q
    ||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||      ||| ||||||||||| |||||     |||||||||    
T  42128052 aaaaactaatacacaatagagaaaataactagaacaataaaactatgacatttgcaccatctgattctgattcatggttgaaccatgtgccctcctcact 42128151  T
Q  381 cttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    |||||||||||  |||||||||||||||| ||||||||||||||||| ||||    
T  42128152 cttgttctccttgtcactcttctcttaggctgaccaccaaatatcataacaa 42128203  T

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Target: chr5; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 265 - 433
Target Start/End: Original strand, 42116871 - 42117058
Alignment:
Q  265 aaacttattttaaacagaaagtaaaa-actaacacacaatagagaaaataaccagaataataaaactatgacatttgcacca------------------ 345  Q
    |||||||||||||  ||||||||||| ||||||||||||||||||||||||| | || ||||||||||||||||||||||||                      
T  42116871 aaacttattttaagaagaaagtaaaaaactaacacacaatagagaaaataacaacaacaataaaactatgacatttgcaccatctgattctgattctgat 42116970  T
Q  346 tcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaat 433  Q
    ||| ||||||||||| ||||| ||| || |||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||||    
T  42116971 tctgattcatggttgtaccatggttccttctcattcttgttcttcttttcactcttctcttaggctgaccaccaaatatcatcacaat 42117058  T

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Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 245 - 432
Target Start/End: Original strand, 42122614 - 42122808
Alignment:
Q  245 agattgtcacactcaca-tcaaaacttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgca 342  Q
    ||||||||||||||| | |||| | ||||||||||||||||||||||| | ||||||||| ||| ||| |||| | || |||||||||||||||||||||    
T  42122614 agattgtcacactcaaaatcaaga-ttattttaaacagaaagtaaaaaaccaacacacaacagataaagtaactacaacaataaaactatgacatttgca 42122712  T
Q  343 cca------tcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    |||      ||| ||||||||||| |||||     ||||||||||||||||||||  ||||||||||||||||  |||||||||||||||| ||||    
T  42122713 ccatctgattctgattcatggttgaaccatgtgccctcctcactcttgttctccttgtcactcttctcttaggcggaccaccaaatatcatgacaa 42122808  T

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Target: chr5; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 41714465 - 41714285
Alignment:
Q  245 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcacc 344  Q
    |||||||||||||||||||||| ||||||||||||| || |    |||||||| |   ||||| ||| || || |||  |||||||| ||||||||||||    
T  41714465 agattgtcacactcacatcaaa-cttattttaaacacaagg----aactaacaaag--tagaggaaaaaatcacaattctaaaactacgacatttgcacc 41714373  T
Q  345 atcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    ||   ||||||||||| ||||||| | ||||||| |||||||||||   ||||| |||||||||| ||||||||||||||||| ||||    
T  41714372 attcgattcatggttgaaccattggtcctcctcattcttgttctccctgtcactattctcttaggctgaccaccaaatatcatgacaa 41714285  T

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Target: chr5; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 282 - 432
Target Start/End: Complemental strand, 41572929 - 41572781
Alignment:
Q  282 aaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattcatggttggaccattgtttctcctcactc 381  Q
    |||| ||||||||||||| ||  |||||||||| ||||| ||||||||||| |||| |||||||||| |||||||||||  ||||   ||||||||||||    
T  41572929 aaaggaaaaactaacacagaa--gagaaaataatcagaacaataaaactatcacatctgcaccatctaattcatggttgagccatgaattctcctcactc 41572832  T
Q  382 ttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    || | |||||  | ||||||  |||||| ||||| ||||  ||||||||||    
T  41572831 ttatcctccttgtaactctttgcttaggttgacctccaaccatcatcacaa 41572781  T

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Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 432
Target Start/End: Complemental strand, 41618549 - 41618420
Alignment:
Q  304 agagaaaataaccagaataataaaa-ctatgacatttgcaccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttc 402  Q
    ||||||||||| ||||| ||||||| |||| |||| ||||| |||| |||||||||||  ||||   |||||||||||||||| |||||  ||||||||     
T  41618549 agagaaaataatcagaacaataaaaactatcacatctgcactatctaattcatggttgagccatgagttctcctcactcttgtgctccttgtcactcttt 41618450  T
Q  403 tcttaggatgaccaccaaatatcatcacaa 432  Q
     |||||| ||||| ||||  ||||||||||    
T  41618449 gcttaggttgacctccaaccatcatcacaa 41618420  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 125 - 175
Target Start/End: Complemental strand, 34234388 - 34234338
Alignment:
Q  125 tttcagtttgtgtacttgtaaaactcaattttgtactgattaaattagatg 175  Q
    |||| ||||||||||||| |||||||||||||||||| || | ||||||||    
T  34234388 tttctgtttgtgtacttgcaaaactcaattttgtactaataagattagatg 34234338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 245 - 432
Target Start/End: Complemental strand, 11995353 - 11995166
Alignment:
Q  245 agattgtcacactcacatcaaaacttattttaaacagaaagtaaaaactaacacacaatagagaaaataaccagaat----aataaaactatgacatttg 340  Q
    ||||| ||||||||| |||||| ||||||| ||| | || ||||||||||||||||||||||||||||||||| ||     ||||| |||| ||||||||    
T  11995353 agattatcacactcagatcaaa-cttatttaaaatacaaggtaaaaactaacacacaatagagaaaataaccacaaacaacaataagactaagacatttg 11995255  T
Q  341 caccatcttattcatggttggaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
         ||| ||||||||||| ||||| ||| || ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  11995254 at---tctgattcatggttgcaccatggttcctactcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaa 11995166  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 432
Target Start/End: Original strand, 12247609 - 12247764
Alignment:
Q  280 agaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccat------cttattcatggttggaccattgtttct 373  Q
    |||| ||||||||||||||||||||||||||||||||| || || |   ||| ||||||  ||||||      || ||||||||||| ||||| ||| ||    
T  12247609 agaaggtaaaaactaacacacaatagagaaaataaccacaacaaga---ctacgacattgccaccatttgattctgattcatggttgcaccatggttcct 12247705  T
Q  374 cctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
     ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||    
T  12247706 actcactcttgttctccttttcactcttcttttaggctgaccaccaaatatcatcacaa 12247764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 339
Target Start/End: Complemental strand, 32682557 - 32682495
Alignment:
Q  277 aacagaaagtaaaaactaacacacaatagagaaaataaccagaataataaaactatgacattt 339  Q
    |||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||    
T  32682557 aacagaaagtaaaaactaacacacaatagagaaaataagcacaacaataagactatgacattt 32682495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 432
Target Start/End: Complemental strand, 32682495 - 32682456
Alignment:
Q  393 ttcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  32682495 ttcactcttctcttaggatgaccaccaattatcatcacaa 32682456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 432
Target Start/End: Original strand, 11117294 - 11117465
Alignment:
Q  268 cttattttaaacagaaagtaaaaa-ctaacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc------atggttg 360  Q
    |||||||||||||||||||||||| | ||||| |||  |||||| |||| |  | ||||||||||||||||||||||||||| ||||      ||| |||    
T  11117294 cttattttaaacagaaagtaaaaaaccaacacccaacggagaaagtaactacgacaataaaactatgacatttgcaccatctgattctgattcatgtttg 11117393  T
Q  361 gaccattgtttctcctcactcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
     |||||     ||||||||||||||||||||  |||||||||||||||| ||||||||||||||||| ||||    
T  11117394 aaccatgtgcgctcctcactcttgttctccttgtcactcttctcttaggctgaccaccaaatatcatgacaa 11117465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 30021068 - 30021105
Alignment:
Q  268 cttattttaaacagaaagtaaaaactaacacacaatag 305  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  30021068 cttattttaaatagaaggtaaaaactaacacacaatag 30021105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 8522263 - 8522340
Alignment:
Q  277 aacagaaagtaaaaact-aacacacaatagagaaaataaccagaataataaaactatgacatttgcaccatcttattc 353  Q
    ||||||||||||||||  |||| |||| |||||||||||  | || || ||||||| |||||||||||||||| ||||    
T  8522263 aacagaaagtaaaaacccaacagacaaaagagaaaataattacaacaacaaaactacgacatttgcaccatctgattc 8522340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 432
Target Start/End: Original strand, 8522379 - 8522431
Alignment:
Q  380 tcttgttctcctattcactcttctcttaggatgaccaccaaatatcatcacaa 432  Q
    |||||| || || |||||||| |||||||| ||||||||||||||||| ||||    
T  8522379 tcttgtccttcttttcactctcctcttaggctgaccaccaaatatcatgacaa 8522431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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