View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0610_high_9 (Length: 416)
Name: NF0610_high_9
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 15039244 - 15039615
Alignment:
| Q |
16 |
atgcataaaattaggataatcgaacaaaggtgaaagcctacctcgatagaaataaaa-aacacaattccccgactgcatttgctgaaaagaattaaaggc |
114 |
Q |
| |
|
|||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||| | |||||| ||||||| |||| |||| |
|
|
| T |
15039244 |
atgcataaaattagtataatcggacaaaggtgaaagcctacctcgatacaaataaaaaaacacaattcccatatagcattttctgaaaataattgaaggt |
15039343 |
T |
|
| Q |
115 |
ttcgtcaataaagatcacacaatttctgttaccaacacagaaacccgaagcacgatatattgtcttgtaacatattgacaaggaatgctattgttatatt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15039344 |
ttcgtcaataaagatcacacaatttctgttaccaacacagaaacccgaagcacgatatattctcttgtaacatattgacaaggaatgctattgttatatt |
15039443 |
T |
|
| Q |
215 |
attgaaaccttggccgtctctatgttgttctattgaaaccctatattgttaacactaagaagtagttcaaggcaataataatcatgacaataaggtaaaa |
314 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
15039444 |
attgaaaccttggctgtctctatgttgttctattgaaaccctatattgttaacactaagaagtagttcaaggcaataataatcatgacaataaggt-aaa |
15039542 |
T |
|
| Q |
315 |
aggttgtacttattcaaattttactcatatcgttcattgtgagaatcatggaccaaattcaatagtaatgtta |
387 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15039543 |
aggttgtacttattcaaattttactcatatcgttcattgtgagaatcatggaccaaattcaatagtaatgtta |
15039615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 15012808 - 15012935
Alignment:
| Q |
39 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
138 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15012808 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcattttctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
15012907 |
T |
|
| Q |
139 |
tctgttaccaacacagaaacccgaagca |
166 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15012908 |
tctgttaccaacacagaaacccgaagca |
15012935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 15018256 - 15018382
Alignment:
| Q |
39 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
138 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
15018256 |
acaaaggctaaagccaacctcgatacaaataaaaaacacaattccccgactgcattttctgaaaagaattgaagg-tttttcaataaagatcacacaatt |
15018354 |
T |
|
| Q |
139 |
tctgttaccaacacagaaacccgaagca |
166 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15018355 |
tctgttaccaacacagaaacccgaagca |
15018382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 39 - 166
Target Start/End: Original strand, 15025374 - 15025500
Alignment:
| Q |
39 |
acaaaggtgaaagcctacctcgatagaaataaaaaacacaattccccgactgcatttgctgaaaagaattaaaggcttcgtcaataaagatcacacaatt |
138 |
Q |
| |
|
||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| || |||||||||||||||||||| |
|
|
| T |
15025374 |
acaaaggctaaagccaacctcgatacaaataaaaaacacaattccccgactgcattttctgaaaagaattgaagg-tttttcaataaagatcacacaatt |
15025472 |
T |
|
| Q |
139 |
tctgttaccaacacagaaacccgaagca |
166 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
15025473 |
tctgttaccaacacagaaacccgaagca |
15025500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 177 - 208
Target Start/End: Original strand, 15012967 - 15012998
Alignment:
| Q |
177 |
tcttgtaacatattgacaaggaatgctattgt |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
15012967 |
tcttgtaacatattgacaaggaatgctattgt |
15012998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 169 - 211
Target Start/End: Complemental strand, 2131582 - 2131540
Alignment:
| Q |
169 |
atatattgtcttgtaacatattgacaaggaatgctattgttat |
211 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
2131582 |
atatattctcttgtaacatattgacaagtaatgctattgttat |
2131540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 11856765 - 11856819
Alignment:
| Q |
214 |
tattgaaaccttggccgtctctatgttgttctattgaaaccctatattgttaaca |
268 |
Q |
| |
|
|||||||||| | | ||||||| |||| ||||||||||||||||||| ||||||| |
|
|
| T |
11856765 |
tattgaaaccctagtcgtctctttgttattctattgaaaccctatatagttaaca |
11856819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2365 times since January 2019
Visitors: 3818