View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_12 (Length: 448)
Name: NF0610_low_12
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 23 - 420
Target Start/End: Complemental strand, 39775727 - 39775330
Alignment:
| Q |
23 |
atcatcagacaagaagattattggtataaatcattttcatgatgatttagtcaaaggaactttgttgggttgggtatccaaataatgcagcacaattgca |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775727 |
atcatcagacaagaagattattggtataaatcattttcatgatgatttattcaaaggaactttgttgggttgggtatccaaataatgcagcacaattgca |
39775628 |
T |
|
| Q |
123 |
caaacatttcatgtccatcgatccatcaaataaggactaccccacaaaataaaaccattgctattatttttgttttcaatgatcaatccaacaagagaca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39775627 |
caaacatttcatgtccatcgatccatcaaataaggactaccccacaaaataaaaccattgctattatttttgttttcaatgatcaatccaacaagggaca |
39775528 |
T |
|
| Q |
223 |
actcaaaatagattgaaaggcattataacgacaagagcatgataccttaaagtagagtacggtcatgcttaattaaacatcgcttgtaagatcaaaatta |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775527 |
actcaaaatagattgaaaggcattataacgacaagagcatgataccttaaagtagagtacggtcatgcttaattaaacatcgcttgtaagatcaaaatta |
39775428 |
T |
|
| Q |
323 |
ctactactattagtttcattttccaacaacaatcatacacaactttaggacatgtatagcaagagcatcaattatatgcaatcatgcaccataatgtt |
420 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39775427 |
ctactactattagtttcattttccaacaacaatcatacacaactttaggacatgtatagcaagagcatcaattatatgcaatcatgcaccataatgtt |
39775330 |
T |
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