View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_13 (Length: 424)
Name: NF0610_low_13
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 10 - 329
Target Start/End: Original strand, 53150784 - 53151103
Alignment:
| Q |
10 |
aacaatatcttaagtaaaccctctcttttcaacaacatcagcaataacctcaacaacaaaatcttcatcaatcaccagatttttcggcgcatgtgttata |
109 |
Q |
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| T |
53150784 |
aacaagatcttaagtaaaccctctcttttcaacaacatcagcaataacctcaacaacaaaattgtcatcaatcaccaaatttttcgacgcatgtgttata |
53150883 |
T |
|
| Q |
110 |
atacaaaatcaccaaattccgacgagagcaggcctcaacggagagtacactggaaaaccccaataagcaaaagcaagatgaaaactataccaaaaatgag |
209 |
Q |
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| T |
53150884 |
acacaaaatcaccaaattccgacgagagcaggcctcaacggagagtacactggaaaaccccaataagcaaaatcaagatgaaaactataccaaaaatgag |
53150983 |
T |
|
| Q |
210 |
tgaatatgtgaacaagaagcacaattgaagcaaaaacacaagaaaaactctaactaggagttgttgaaaaacttattacggcgaccgaaaagtatcatag |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
53150984 |
cgaatatgtgaacaagaagcacaattgaagcaaaaacacaagaaaaactctaactaggagttgccgaaaaacttattacggcgaccgaaaagtatcatag |
53151083 |
T |
|
| Q |
310 |
aggagagagataagagaaat |
329 |
Q |
| |
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|||||||||||||||||||| |
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| T |
53151084 |
aggagagagataagagaaat |
53151103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 151 - 329
Target Start/End: Complemental strand, 38665172 - 38664995
Alignment:
| Q |
151 |
agagtacactggaaaaccccaataagcaaaagcaagatgaaaactataccaaaaatgagtgaatatgtgaacaagaagcacaattgaagcaaaaacacaa |
250 |
Q |
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||||||||| | ||||| ||||||||||||| || ||||||| ||||||| ||| |||| |||| | ||||||||||||||||| |||||||||||| || |
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| T |
38665172 |
agagtacaccgaaaaacaccaataagcaaaatcatgatgaaatctataccgaaa-tgagcgaatctctgaacaagaagcacaatcgaagcaaaaacaaaa |
38665074 |
T |
|
| Q |
251 |
gaaaaactctaactaggagttgttgaaaaacttattacggcgaccgaaaagtatcatagaggagagagataagagaaat |
329 |
Q |
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||||||||||||| | |||| ||||||||||||| ||| | | |||||||||||||| |||||||| |||||||| |
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| T |
38665073 |
gaaaaactctaaccataagtttccgaaaaacttattatggcaatcagaaagtatcatagagtagagagatcagagaaat |
38664995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 38665415 - 38665362
Alignment:
| Q |
39 |
caacaacatcagcaataacctcaacaacaaaatcttcatcaatcaccagatttt |
92 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
38665415 |
caacaacatcagcagtaacctcaacaacaaaatcttcatcaatcaccagatttt |
38665362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 33150075 - 33150116
Alignment:
| Q |
43 |
aacatcagcaataacctcaacaacaaaatcttcatcaatcac |
84 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
33150075 |
aacaacagcaaaaacctcaacatcaaaatcttcatcaatcac |
33150116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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