View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_14 (Length: 421)
Name: NF0610_low_14
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 30 - 390
Target Start/End: Complemental strand, 33227759 - 33227395
Alignment:
| Q |
30 |
ggagttgattggtcgtggtgaaattgtttctttggtagttggggtggggtgggggctctagaagatagccttgaaattaaagtagtttgagcttcttgtt |
129 |
Q |
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| T |
33227759 |
ggagttgattggtcgtggcgaaattgtttctttggtagttggggtggggtgggggctctagaagatagccttgaaattaaagtagtttgagcttcttgtt |
33227660 |
T |
|
| Q |
130 |
ggataatagagttgtcaatgtccaaagaccatatatattttagaagccttgttttgataattttgttcctttggcgaccaataattgtttgggcgtataa |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33227659 |
ggataatagagttgtcaatgtccaaagaccatatatattttagaagccttgttctgataattttgttcctttggcgaccaataattgtttgggtgtataa |
33227560 |
T |
|
| Q |
230 |
ctcattgatcatgattcatgagatttggtaccagtgaatttcctcttgaaagagaatgttgtcgtgttctatctgcagatggttttcaagccgaatatgt |
329 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33227559 |
ctcattgatcatgattcatgagatttggtaccagtgaatttcctcttgaaagagaatgttgtcgtgttctatctgaagatggttttcaagccgaatatgt |
33227460 |
T |
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| Q |
330 |
aaaagggaatcgactctctcaagataa----cgctgaaaccatttaagcctagcttcaacatgtt |
390 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
33227459 |
aaaagggaatcgactctctcaagataacgcgcgctgaaaccatttaagcctagcttcaacatgtt |
33227395 |
T |
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