View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_16 (Length: 416)
Name: NF0610_low_16
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 30 - 403
Target Start/End: Complemental strand, 28936163 - 28935790
Alignment:
| Q |
30 |
ctgcatatggaaagttcattgttagaaatagaactttcaaattatagttccagcaaacagtttaataagttcaatatgttatcaagtattaacctggtta |
129 |
Q |
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| T |
28936163 |
ctgcatatggaaagttcattgttagaaatagaactttcaaattatagttccagcaaacagtttaataagttcaatatgttatcaagtattaacctggtta |
28936064 |
T |
|
| Q |
130 |
aaaacaaaatgtaattgaacagagcaataaaaggttggnnnnnnnntactataatcttaccttgttatcatagaaaataccattagttttgtaagcatta |
229 |
Q |
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| T |
28936063 |
aaaacaaaatgtaattgaacagagcaataaaaggttggaaaaaaaatactataatcttaccttgttatcatagaaaataccattatttttgtaagcatta |
28935964 |
T |
|
| Q |
230 |
tgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatctccctgtatattcataagtaaaagccaattcataaatc |
329 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28935963 |
tgctctgctgtacaacgttcaatcagctgagggcagcagtacttcttcagtgtttcaacatctccctgtatattcataagtaaaagccaattcataaatc |
28935864 |
T |
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| Q |
330 |
atagatgctgatgcatcagcccgaacaacaaataaatttaatgtaaacataagaagttcttagtgctttatcct |
403 |
Q |
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| T |
28935863 |
atagatgctgatgcatcagcccgaataacaaataaatttaatgtaaacataagaagttcttagtgctttatcct |
28935790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 180 - 327
Target Start/End: Complemental strand, 10189313 - 10189166
Alignment:
| Q |
180 |
ataatcttaccttgttatcatagaaaataccattagttttgtaagcattatgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcag |
279 |
Q |
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| T |
10189313 |
ataatctcaccttgttatcatagaagataccacgatctttataagcaccatgctcggctttacagcgttcaatcagctgaggggcacagtacttcttcaa |
10189214 |
T |
|
| Q |
280 |
tgtttcaacatctccctgtatattcataagtaaaagccaattcataaa |
327 |
Q |
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|||||||| |||||||||||| || | ||||||||||||||||||||| |
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|
| T |
10189213 |
tgtttcaaaatctccctgtatgtttacaagtaaaagccaattcataaa |
10189166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 10189479 - 10189402
Alignment:
| Q |
34 |
atatggaaagttcattgttagaaatagaactttcaaattatagttccagcaaacagtttaataagttcaatatgttat |
111 |
Q |
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||||||||| |||||||||| |||||||||| |||||| |||||| | ||||||||| || |||||||||||||| |
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| T |
10189479 |
atatggaaaattcattgttaaaaatagaactaccaaattttagttctggaaaacagttttatgtgttcaatatgttat |
10189402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 180 - 327
Target Start/End: Original strand, 35118443 - 35118590
Alignment:
| Q |
180 |
ataatcttaccttgttatcatagaaaataccattagttttgtaagcattatgctctgctgtacaatgttcaatcagctgagggcagcagtacttcttcag |
279 |
Q |
| |
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||||||| |||||||||||| |||| ||||||| |||| |||||| |||||||||| |||| |||||||||||||||| |||||||||||||||| |
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| T |
35118443 |
ataatctcaccttgttatcaaagaagataccatggcttttataagcaccatgctctgctttacagcgttcaatcagctgaggcgagcagtacttcttcag |
35118542 |
T |
|
| Q |
280 |
tgtttcaacatctccctgtatattcataagtaaaagccaattcataaa |
327 |
Q |
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||||||||||||||||||||| || | ||||||||||||||||||||| |
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| T |
35118543 |
tgtttcaacatctccctgtatgtttacaagtaaaagccaattcataaa |
35118590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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