View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_19 (Length: 389)
Name: NF0610_low_19
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 28 - 378
Target Start/End: Complemental strand, 28343338 - 28342988
Alignment:
| Q |
28 |
caataatcaaaccaagaacacctcattttccatgttaatcataattttcactttgttctatgcgtttttcaatcctgcacactcaatttcctttaacttc |
127 |
Q |
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| T |
28343338 |
caataatcaaaccaagaacacctcattttccatgttaatcataattttcactttgttctatgcgtttttcaatcctgcacactcaatttcctttaacttc |
28343239 |
T |
|
| Q |
128 |
actagcttccaatcaaacctatatctaatcaaattccaaggtgatgcattttcctcaaacaatgttcttcagctaacaaaaaaccaacttgatggcccta |
227 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28343238 |
actagcttccaatcaaacctatatctaataaaattccaaggtgatgcattttcctcaaacaatgttcttcagctaacaaaaaaccaacttgatggcccta |
28343139 |
T |
|
| Q |
228 |
tcacaagaagcgtcggccgcgcttcgtttgatcaacctttgaagctttatgataaagaaacaaaagagctcactgatttcacaacacatttcacctttat |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28343138 |
tcacaagaagcgtcggccgcgcttcgtttgatcaacctttgaagctttatgataaagaaacaaaagagctcactgatttcacaacacatttcacctttat |
28343039 |
T |
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| Q |
328 |
tatgagagctgttaatttatcgatgtttggtgacggtctatcgttcttcat |
378 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
28343038 |
tatgagagctgttaatttatcgctgtttggtgacggtctatcgttcttcat |
28342988 |
T |
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