View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_21 (Length: 361)
Name: NF0610_low_21
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 5 - 329
Target Start/End: Complemental strand, 32325815 - 32325485
Alignment:
| Q |
5 |
tctccaacaatataatnnnnnnngtgtaaagatttaatttgattatagaaaaacaaaattattttcctcatgaaagtgggaaatatacgtccaaacgagg |
104 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32325815 |
tctccaacaatataataaaaaaagtgtaaagatttaatttgattatagaaaaacaaaattattttcctcatgaaagtgggaaatatacgtccaaacgagg |
32325716 |
T |
|
| Q |
105 |
tcgtgaaaacaccaatgaaaagctaaaaaatcaga------accaaagccacaaggaaagaaacgttgctttccttattttctttcctcatccaccatgc |
198 |
Q |
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||||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32325715 |
tcgtgaaaacaccaatgtaaagctaaaaaatcatagacataaccaaagccacaaggaaagaaacgttgctttccttattttctttcctcatccaccatgc |
32325616 |
T |
|
| Q |
199 |
atgcatgcacgattatcccttggagttggaagaacgaattccatttctttcttctgattttctttccccaccacatccccaaacccaacatttaaaattt |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32325615 |
atgcatgcacgattatcccttggagttggaagaacgaattccatttctttcttctgattttctttccccaccacatccccaaacccaacatttaaaattc |
32325516 |
T |
|
| Q |
299 |
cctttaccatttcctcctcctcctccacccc |
329 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
32325515 |
cctttaccatttcctcctcctcctccacccc |
32325485 |
T |
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