View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_22 (Length: 330)
Name: NF0610_low_22
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 329
Target Start/End: Complemental strand, 40127298 - 40126972
Alignment:
| Q |
8 |
gagcacagaaggcagtatgatgggacccatgtttcggtagatagataccaggggagagattactgggtggtgaatgtgagaagccaagatcgtcctaagt |
107 |
Q |
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| T |
40127298 |
gagcacaaaaggcagtatgatgggacccatgtttcggtggatagataccaggggagagattactgggtggtgaatgtgagaagccgagatcgtcctaagt |
40127199 |
T |
|
| Q |
108 |
tactgtttgatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagcccaatggcagaacaggtacaccggat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40127198 |
tactgtttgatattgtgtgcatgctcacggacatgcaatatgaggtgtttcatgcggctgttacctcgaacagccccatggcagaacaggtacaccggat |
40127099 |
T |
|
| Q |
208 |
ttttcaattaattatttgc-aggccaaaaggtatataggtgcaattatttatgtggtg----nnnnnnnncctctgttttctaatcacaattcaattaat |
302 |
Q |
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||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40127098 |
ttttcaattaattatctgcaaggccaaaaggtatataggtgcaattatttatgtggtgtttttttttttctctctgttttctaatcacaattcaattaat |
40126999 |
T |
|
| Q |
303 |
gtgtggccgtaaacatgaatagactgt |
329 |
Q |
| |
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|||||||| |||||||||||||||||| |
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| T |
40126998 |
gtgtggccataaacatgaatagactgt |
40126972 |
T |
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