View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_25 (Length: 313)
Name: NF0610_low_25
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 8555071 - 8554798
Alignment:
| Q |
11 |
cacagacacaacaacattcaccaaacaatgggattatgggaagcagacaaagtagtacaaggtggacaccaacaacagatcagataagaatattgaagga |
110 |
Q |
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| T |
8555071 |
cacagacacaacaacattcaccaaacaatgggattatgggaagcagacaaagtagtacaaggtggacaccaacaacagatcagataagaatattgaagga |
8554972 |
T |
|
| Q |
111 |
tctttactacaacaatggaattagatcaccaagtgcagaacagattcagagaatctctgctaggttaagacagtatggaaagattgaaggcaaaaatgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
8554971 |
tctttactacaacaatggaattagatcaccaagtgcagaacagattcagagaatctctgctaggttaagacagtatggtaagattgaaggcaaaaatgtc |
8554872 |
T |
|
| Q |
211 |
ttttattggtttcaaaatcacaaagctagagaaagacagaagaaaaggttcacttctgatgttaatgttgttcc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8554871 |
ttttattggtttcaaaatcacaaagctagagaaagacagaagaaaaggttcacttctgatgttaatgttgttcc |
8554798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 35184665 - 35184617
Alignment:
| Q |
200 |
gcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaagaca |
248 |
Q |
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| T |
35184665 |
gcaagaatgtgttctattggtttcaaaatcacaaagctagagaaagaca |
35184617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 24023474 - 24023550
Alignment:
| Q |
209 |
tcttttattggtttcaaaatcacaaagctagagaaagacagaagaaaaggttcacttctgatgttaatgttgttcct |
285 |
Q |
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| T |
24023474 |
tcttttattggttccaaaatcacaaagctagaaaaacacagaagaaaaggttcacttctgatgttaatgttgttcct |
24023550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 40004968 - 40004909
Alignment:
| Q |
186 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
245 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
40004968 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagagaaag |
40004909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 45304887 - 45304828
Alignment:
| Q |
186 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
245 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
45304887 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagcaagagaaag |
45304828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 245
Target Start/End: Original strand, 40220578 - 40220637
Alignment:
| Q |
186 |
tggaaagattgaaggcaaaaatgtcttttattggtttcaaaatcacaaagctagagaaag |
245 |
Q |
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|||||| ||||||||||||||||| || ||||||||||| ||||||||||| |||||||| |
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| T |
40220578 |
tggaaaaattgaaggcaaaaatgttttctattggtttcagaatcacaaagccagagaaag |
40220637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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