View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_low_3 (Length: 651)

Name: NF0610_low_3
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_low_3
NF0610_low_3
[»] chr8 (16 HSPs)
chr8 (233-471)||(30055817-30056066)
chr8 (496-639)||(30055402-30055542)
chr8 (233-328)||(4124994-4125089)
chr8 (57-140)||(39566866-39566948)
chr8 (233-308)||(2744009-2744084)
chr8 (233-308)||(7839243-7839318)
chr8 (233-306)||(12958077-12958150)
chr8 (233-303)||(30936080-30936150)
chr8 (233-328)||(13468715-13468810)
chr8 (236-304)||(19715719-19715788)
chr8 (233-287)||(15683005-15683059)
chr8 (260-308)||(39086855-39086903)
chr8 (231-327)||(8521772-8521867)
chr8 (252-296)||(36994502-36994546)
chr8 (233-269)||(8034158-8034194)
chr8 (253-297)||(24988595-24988639)
[»] chr7 (22 HSPs)
chr7 (233-308)||(29059881-29059956)
chr7 (233-308)||(31492179-31492254)
chr7 (62-140)||(25102276-25102354)
chr7 (233-297)||(19477251-19477314)
chr7 (233-284)||(14545019-14545070)
chr7 (233-308)||(21747030-21747105)
chr7 (233-308)||(31776494-31776569)
chr7 (233-308)||(37339723-37339798)
chr7 (233-296)||(28537466-28537525)
chr7 (220-297)||(29428793-29428870)
chr7 (57-124)||(36030932-36031000)
chr7 (254-308)||(28665187-28665241)
chr7 (233-282)||(13254117-13254166)
chr7 (233-297)||(20207573-20207637)
chr7 (253-297)||(1424669-1424713)
chr7 (233-304)||(24172285-24172356)
chr7 (233-308)||(35707922-35707997)
chr7 (234-309)||(32469993-32470070)
chr7 (234-308)||(42741799-42741872)
chr7 (233-297)||(8839282-8839346)
chr7 (246-294)||(33299168-33299216)
chr7 (249-297)||(45778956-45779004)
[»] chr2 (19 HSPs)
chr2 (233-328)||(5394472-5394567)
chr2 (234-308)||(25423821-25423895)
chr2 (233-309)||(9438125-9438201)
chr2 (233-308)||(17981574-17981648)
chr2 (233-328)||(37179971-37180066)
chr2 (234-308)||(13835447-13835521)
chr2 (234-308)||(31579219-31579293)
chr2 (246-308)||(37092185-37092247)
chr2 (233-309)||(18105352-18105427)
chr2 (240-315)||(14551557-14551632)
chr2 (233-308)||(42745106-42745181)
chr2 (233-306)||(7020352-7020425)
chr2 (237-297)||(38743818-38743878)
chr2 (234-300)||(39401067-39401133)
chr2 (246-307)||(3562181-3562242)
chr2 (252-301)||(17655756-17655805)
chr2 (233-269)||(12133259-12133295)
chr2 (233-286)||(14121894-14121947)
chr2 (254-294)||(24412931-24412971)
[»] chr5 (11 HSPs)
chr5 (233-308)||(5123488-5123563)
chr5 (57-140)||(4922057-4922139)
chr5 (233-328)||(10592003-10592098)
chr5 (233-308)||(31113410-31113485)
chr5 (238-308)||(22187988-22188058)
chr5 (233-308)||(30784976-30785051)
chr5 (234-327)||(25983742-25983835)
chr5 (233-294)||(36212972-36213033)
chr5 (78-123)||(8568610-8568655)
chr5 (252-296)||(18244679-18244723)
chr5 (233-308)||(29553615-29553690)
[»] chr4 (18 HSPs)
chr4 (233-308)||(31307056-31307131)
chr4 (233-328)||(33529333-33529428)
chr4 (233-327)||(9012346-9012440)
chr4 (57-140)||(14062111-14062193)
chr4 (57-140)||(29696679-29696761)
chr4 (233-308)||(38766165-38766240)
chr4 (234-308)||(51626296-51626370)
chr4 (233-328)||(46016225-46016320)
chr4 (234-308)||(35972420-35972494)
chr4 (233-308)||(14854681-14854756)
chr4 (239-308)||(15133457-15133526)
chr4 (233-296)||(45994598-45994661)
chr4 (233-297)||(35334099-35334163)
chr4 (233-303)||(13948587-13948657)
chr4 (233-304)||(31308373-31308444)
chr4 (236-296)||(13686681-13686741)
chr4 (246-297)||(25768689-25768740)
chr4 (233-308)||(46250545-46250620)
[»] chr1 (15 HSPs)
chr1 (233-328)||(16756158-16756253)
chr1 (233-308)||(42297432-42297507)
chr1 (245-328)||(49071665-49071748)
chr1 (233-330)||(15642531-15642628)
chr1 (233-328)||(12035626-12035721)
chr1 (233-327)||(36806687-36806781)
chr1 (233-308)||(28724748-28724823)
chr1 (234-308)||(18428132-18428205)
chr1 (233-304)||(9780983-9781054)
chr1 (233-308)||(44913185-44913260)
chr1 (233-301)||(10367580-10367648)
chr1 (233-297)||(46864167-46864231)
chr1 (233-296)||(22022196-22022259)
chr1 (233-296)||(10841093-10841157)
chr1 (233-328)||(39547334-39547429)
[»] chr3 (17 HSPs)
chr3 (234-327)||(1642683-1642776)
chr3 (230-328)||(48204281-48204379)
chr3 (233-309)||(27763797-27763873)
chr3 (233-309)||(30995954-30996030)
chr3 (233-328)||(38331204-38331299)
chr3 (233-308)||(20861324-20861399)
chr3 (244-308)||(8757431-8757495)
chr3 (57-140)||(50406650-50406732)
chr3 (233-328)||(25224775-25224870)
chr3 (233-308)||(55123173-55123248)
chr3 (234-308)||(39950289-39950363)
chr3 (233-330)||(46725501-46725597)
chr3 (265-308)||(40318439-40318482)
chr3 (246-309)||(44941254-44941316)
chr3 (246-288)||(15446085-15446127)
chr3 (246-286)||(15283160-15283200)
chr3 (233-297)||(40294688-40294752)
[»] scaffold0182 (1 HSPs)
scaffold0182 (233-308)||(26407-26482)
[»] chr6 (11 HSPs)
chr6 (233-308)||(12836887-12836962)
chr6 (234-309)||(9536844-9536919)
chr6 (233-308)||(12411224-12411299)
chr6 (233-315)||(31412198-31412280)
chr6 (249-308)||(28099335-28099394)
chr6 (233-301)||(6062118-6062186)
chr6 (245-284)||(423743-423782)
chr6 (233-315)||(1534328-1534408)
chr6 (246-301)||(21028839-21028894)
chr6 (246-301)||(21028976-21029031)
chr6 (233-308)||(21910281-21910355)
[»] scaffold0009 (1 HSPs)
scaffold0009 (233-308)||(27215-27290)
[»] scaffold0013 (1 HSPs)
scaffold0013 (253-308)||(29142-29197)
[»] scaffold0071 (1 HSPs)
scaffold0071 (246-288)||(16065-16107)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 4e-92; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 233 - 471
Target Start/End: Complemental strand, 30056066 - 30055817
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaagaga 332  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||    
T  30056066 cttagggagagcctgccgtccatttgggttccacaatgctcgagggattagtctctttagttgcgtgcgggggatattcgattgacacccaaaaaagaga 30055967  T
Q  333 ttctcgttaacaacaaaattttatctataacaatatataaagcgaatgcgtgattttttgagttgaatttttcattatagttatattcgtgaaca----- 427  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||         
T  30055966 tactcgttaacaacaaaattttatctataacaatatataaagcgaatgcatgattttttgagttgaatttttcattataattatactcgtgaacaaattt 30055867  T
Q  428 ------aagaatgatatattagttggtaaaagattctctgaaaaaacatc 471  Q
          ||||||||||||||||||||||||||||||||||||||||||||    
T  30055866 gtttgtaagaatgatatattagttggtaaaagattctctgaaaaaacatc 30055817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 496 - 639
Target Start/End: Complemental strand, 30055542 - 30055402
Alignment:
Q  496 aaaaaacatacatggtgtcaatttcgaccaaaaaacaagaaaggaaacacatattcatcctgttgttccggtcttagaaccggtttaagtgcagagaaac 595  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  30055542 aaaaaacatacatggtgtcaatttcgaccaaaaaacaagaaaggaaacacatatacatcctgttgttccggtcttagaaccggtttaagtgcagagaaac 30055443  T
Q  596 cggattattattagttccaagaacagtgaccttatcattcattc 639  Q
    ||||||   |||||||||||||||||||||||||||||||||||    
T  30055442 cggatt---attagttccaagaacagtgaccttatcattcattc 30055402  T

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Target: chr8; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 4125089 - 4124994
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||| ||||| ||||||    
T  4125089 cttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaaa 4124994  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 39566948 - 39566866
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  39566948 tgtcattttacaagtatacttctttctttcctctcactttctattcactttcacttcaaccaaacaa-ccgcaaaatcatatca 39566866  T

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Target: chr8; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 2744009 - 2744084
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  2744009 cttagggagagcatgtcgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 2744084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 7839318 - 7839243
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  7839318 cttagggagagcatgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 7839243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 12958150 - 12958077
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggagga 306  Q
    ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||    
T  12958150 cttagggagagcctgtcgcccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

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Target: chr8; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 233 - 303
Target Start/End: Original strand, 30936080 - 30936150
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcgga 303  Q
    |||||||||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||| |||||    
T  30936080 cttagggagagcctgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcgga 30936150  T

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Target: chr8; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 13468810 - 13468715
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||| ||||| |||||| ||||||| ||||||||||||| || |||||||||||||||||||||  |||||||||  || || ||||||||||||    
T  13468810 cttagagagagtctgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaaa 13468715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 236 - 304
Target Start/End: Complemental strand, 19715788 - 19715719
Alignment:
Q  236 agggagagcctgccgtccatttgggtcccacaatgcttga-gggattagtctccgcagttgcgtgcggag 304  Q
    ||||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||||||| ||||||    
T  19715788 agggagagcttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggag 19715719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 287
Target Start/End: Original strand, 15683005 - 15683059
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctc 287  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||||| ||||    
T  15683005 cttagggagagcctgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 260 - 308
Target Start/End: Original strand, 39086855 - 39086903
Alignment:
Q  260 gtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggata 39086903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 231 - 327
Target Start/End: Original strand, 8521772 - 8521867
Alignment:
Q  231 cccttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaa 327  Q
    ||||| ||||||| |||  | ||||||| ||||||||||||| ||||||||||| ||| |||||||| ||||| ||||  ||||| ||||| |||||    
T  8521772 cccttggggagagtctgatgcccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Complemental strand, 36994546 - 36994502
Alignment:
Q  252 ccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttgc 36994502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 8034194 - 8034158
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaat 269  Q
    |||||||||||| ||| ||||||||||||||||||||    
T  8034194 cttagggagagcttgcagtccatttgggtcccacaat 8034158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 24988595 - 24988639
Alignment:
Q  253 catttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||||| |||||||||| || |||||||||||||||||| |||||    
T  24988595 catttgagtcccacaatactcgagggattagtctccgcaattgcg 24988639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 29059881 - 29059956
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  29059881 cttagggagagcctgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggata 29059956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 31492179 - 31492254
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  31492179 cttagggagagcctgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 31492254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 25102276 - 25102354
Alignment:
Q  62 ttttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25102276 tttttcaagtatacatctttctttcctctcattttctattcactttcacttcaaccaaacaaaccagaaaatcatatca 25102354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 19477314 - 19477251
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  19477314 cttagggagagcttgccggccatttgggtcccacaatgc-tgagggattagtctccgcagttgcg 19477251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 14545019 - 14545070
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagt 284  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  14545019 cttagggagagcctgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 21747105 - 21747030
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||| ||  |||||||||||||||||| || ||||||||||||| |||||||| | ||||||||||    
T  21747105 cttagggagagcctaccacccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggata 21747030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 31776494 - 31776569
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||||| || | |||||||||||||||||| || ||||||||| ||| |||||||||| ||||||||||    
T  31776494 cttagggagagccagctgcccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggata 31776569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 37339798 - 37339723
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||| ||||| |||||| | |||||||||||| |||||| ||||||||||||||||||||||||  |||||||||    
T  37339798 cttagtgagagtctgccgcctatttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggata 37339723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 28537466 - 28537525
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    |||||||||||||||||| ||||||||||||    |||||||||||||||||||||||||||||    
T  28537466 cttagggagagcctgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgc 28537525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Complemental strand, 29428870 - 29428793
Alignment:
Q  220 atccaaacagacccttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||||||| | ||||||||||||  ||||| |||||||| |||||||||| | |||||||||||||| |||||||||    
T  29428870 atccaaacaaagccttagggagagtttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttgcg 29428793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 57 - 124
Target Start/End: Original strand, 36030932 - 36031000
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcactt-caaccaaacaac 124  Q
    |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  36030932 tgtcattttataaatatacttctttctttcttctcactttctattcactttcacttaaaaccaaacaac 36031000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 254 - 308
Target Start/End: Original strand, 28665187 - 28665241
Alignment:
Q  254 atttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||| |||||||||||||| |||||||||||||||||||||||  ||||||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggata 28665241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 282
Target Start/End: Complemental strand, 13254166 - 13254117
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggatta 282  Q
    |||||||||||||||||| |||||| |||||||||||||| |||||||||    
T  13254166 cttagggagagcctgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 20207573 - 20207637
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||| ||||||| |||||  ||||||| ||| |||||||| ||||||||||||||||||||||||    
T  20207573 cttaaggagagcttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcg 20207637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 1424669 - 1424713
Alignment:
Q  253 catttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||||||||||||||  |||||| ||||||||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcg 1424713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 24172285 - 24172356
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggag 304  Q
    ||||| |||||| ||||| ||| |||| |||||||||||| || ||||||||||  ||||||||| ||||||    
T  24172285 cttagtgagagcttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggag 24172356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 35707922 - 35707997
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||| | ||||  |||||| | ||| |||||||| |||||||||||||| ||||||||| | ||||||||    
T  35707922 cttagggagaacttgcctcccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggata 35707997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 32469993 - 32470070
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccaca--atgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    ||||||||| | ||||||||||||||||| ||||  ||||| ||| ||||||| | |||||||||  |||||||||||    
T  32469993 ttagggagaacttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatat 32470070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 42741872 - 42741799
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||| ||||||  |||||||||| ||| ||| || ||||||||| |||| ||||||||| ||||||||||    
T  42741872 ttagggagaacctgccacccatttgggt-ccataatactcgagggattaatctctgcagttgcgcgcggaggata 42741799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 8839346 - 8839282
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||||||||  |||||| | |||| | ||||||||| || |||||||||||||||||| |||||    
T  8839346 cttagggagaatctgccgcctatttagatcccacaatactcgagggattagtctccgcaattgcg 8839282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 294
Target Start/End: Original strand, 33299168 - 33299216
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagtt 294  Q
    |||| ||||||||| | ||||||||||| | ||||||||||||||||||    
T  33299168 tgccatccatttggattccacaatgcttaatggattagtctccgcagtt 33299216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 249 - 297
Target Start/End: Original strand, 45778956 - 45779004
Alignment:
Q  249 cgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||| |||| ||| |||||| || ||||||||||||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcg 45779004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 5e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 5394472 - 5394567
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||  |||||||||| |||||| ||||||||||||    
T  5394472 cttagggagagcctgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaaa 5394567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 25423821 - 25423895
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  25423821 ttagggagaacctgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggata 25423895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 9438201 - 9438125
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    |||||| ||| ||||||| ||||||| ||||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  9438201 cttaggaagaacctgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggatat 9438125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 17981574 - 17981648
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| ||||| | ||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||    
T  17981574 cttagggagagcttgccg-caatttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggata 17981648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 37180066 - 37179971
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||  ||||| ||||||| |||||||||| || ||||||||||||| |||| ||||| ||||||||||  ||||| ||||| ||||||    
T  37180066 cttagggagagtgtgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaaa 37179971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 13835521 - 13835447
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||| |||||| |||||| ||||||||||| ||||||||||||| || ||||||| ||| ||||||||    
T  13835521 ttagggagagcttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggata 13835447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 31579293 - 31579219
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||| |||||| ||||||  ||||||||||||| |||| |||||| |||||||||||| ||||||||||    
T  31579293 ttagggagagtctgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggata 31579219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 37092247 - 37092185
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| |  |||||||||    
T  37092247 tgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggata 37092185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 18105427 - 18105352
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    |||| ||||||||||||| ||||||| ||| |||||| || ||||||||||||| |||||||||| |||||||||||    
T  18105427 cttatggagagcctgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatat 18105352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 240 - 315
Target Start/End: Original strand, 14551557 - 14551632
Alignment:
Q  240 agagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgatt 315  Q
    |||| |||||| | |||||||||| |||||||| ||||||||| |||||||||||||| || ||||||| ||||||    
T  14551557 agagtctgccgcctatttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatt 14551632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 42745181 - 42745106
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||| |||| | | |||||||| |||||||| | |||||||||||||| ||||||||| ||||||||||    
T  42745181 cttagggagagtctgctgcctatttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggata 42745106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 7020425 - 7020352
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggagga 306  Q
    |||||||||| | ||||| |||||||||||| |||||||| ||| ||||||||||  |||||||| ||||||||    
T  7020425 cttagggagaacttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 237 - 297
Target Start/End: Original strand, 38743818 - 38743878
Alignment:
Q  237 gggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||||||| |||||  ||||||| || |||||||||| |||||||||||||||||||||||    
T  38743818 gggagagcttgccgctcatttggatctcacaatgctttagggattagtctccgcagttgcg 38743878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 39401133 - 39401067
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgc 300  Q
    |||||||||||  | ||||||||| |||||||||||||| | | |||||| ||||||||||||||||    
T  39401133 ttagggagagctcgtcgtccatttaggtcccacaatgctcgtgagattagactccgcagttgcgtgc 39401067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 3562242 - 3562181
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggat 307  Q
    ||||| ||||||||||||||||| |||||||| | |||||| |||||||||| |||| ||||    
T  3562242 tgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 252 - 301
Target Start/End: Original strand, 17655756 - 17655805
Alignment:
Q  252 ccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcg 301  Q
    |||||||| | |||||| ||| ||||||||||||||||||||||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcg 17655805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 12133295 - 12133259
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaat 269  Q
    ||||||||||||||||||||||||||||||| |||||    
T  12133295 cttagggagagcctgccgtccatttgggtcctacaat 12133259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 14121947 - 14121894
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtct 286  Q
    ||||| |||| | ||||| ||||||| ||||||||||||| |||||||||||||    
T  14121947 cttagagagaacttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 24412971 - 24412931
Alignment:
Q  254 atttgggtcccacaatgcttgagggattagtctccgcagtt 294  Q
    ||||| |||||||||| ||||||| ||||||||||||||||    
T  24412971 atttgagtcccacaatacttgaggaattagtctccgcagtt 24412931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 5123563 - 5123488
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  5123563 cttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 5123488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 4922057 - 4922139
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    |||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4922057 tgtcattttataagtatacttctttcttttttctcattttctattcactttcacttcaaccaaacaa-ccacaaaatcatatca 4922139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 10592003 - 10592098
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||||||||| |||||| ||||||| ||||||||||||| |||||||||||||| ||||||||| ||||||||||  ||||| ||||| ||||||    
T  10592003 cttagggagagtctgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaaa 10592098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 31113410 - 31113485
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||| ||| |||||||| ||||||||| || |||||||||||||||||||||||| ||| ||||||    
T  31113410 cttagggagagcctaccgcccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggata 31113485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 238 - 308
Target Start/End: Complemental strand, 22188058 - 22187988
Alignment:
Q  238 ggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||| |||||| | |||||||||||||||| || |||||||||||||||||||||||| ||||||||||    
T  22188058 ggagagtctgccgcctatttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggata 22187988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 30785051 - 30784976
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||  ||||| ||||||| |||| ||||||| |  ||||||||||||||||||||||| ||||||||||    
T  30785051 cttagggagaatctgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggata 30784976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 25983742 - 25983835
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaa 327  Q
    ||||||||||| ||||| ||||||| |||||| |||| | ||| |||||||||||||||||||   |||||||||  || || |||||||||||    
T  25983742 ttagggagagcttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 294
Target Start/End: Original strand, 36212972 - 36213033
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagtt 294  Q
    |||||||||||  ||||| |||||| |||||||||||||| |||||||| ||||||||||||    
T  36212972 cttagggagagtttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 8568610 - 8568655
Alignment:
Q  78 ctttctttcctctcaatttctattcactttcacttcaaccaaacaa 123  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  8568610 ctttctttcctttcactttctattcactttcacttctaccaaacaa 8568655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 18244679 - 18244723
Alignment:
Q  252 ccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    |||||||||| ||||||| |||||| |||||||||||||||||||    
T  18244679 ccatttgggttccacaatacttgagagattagtctccgcagttgc 18244723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 29553615 - 29553690
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||  || ||||||||||||||||| ||||||  || |||||||||| ||||||| | | ||||||||    
T  29553615 cttagggagagtttgtcgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggata 29553690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 31307131 - 31307056
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  31307131 cttagggagagcctgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 31307056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 33529333 - 33529428
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||||||||||  ||||||||| | |||| ||||||||||||    
T  33529333 cttagggagagcttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaaa 33529428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 9012346 - 9012440
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaa 327  Q
    |||||||||||| ||||| ||| ||||||||||||||||| |||||||||||||||||||||||| ||||||||||  ||||| | |||||||||    
T  9012346 cttagggagagcttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 14062111 - 14062193
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14062111 tgtcattttataagtatacttctttctgtcctctcattttctattcactttcactacaaacaaacaa-ccacaaaatcatatca 14062193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 57 - 140
Target Start/End: Complemental strand, 29696761 - 29696679
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29696761 tgtcattttataaatatacttttttctttcctctcactttctattcactttcacttcaaccaaacaa-ccataaaatcatatca 29696679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 38766165 - 38766240
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||| |||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  38766165 cttagggagagtctgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggata 38766240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 51626370 - 51626296
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||||||    
T  51626370 ttagggagagtctgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggata 51626296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 46016225 - 46016320
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||||||||| ||||||||||||||||||||| || | ||||||||||| ||||||| | ||||||||  ||||| ||||| ||||||    
T  46016225 cttagggagagcctgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaaa 46016320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 35972420 - 35972494
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||  ||||| ||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||    
T  35972420 ttagggagagtttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggata 35972494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 14854681 - 14854756
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| ||||| |||||||||||| ||||| || |||||||||||||| ||||||||| ||||||||||    
T  14854681 cttagggagagcttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggata 14854756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 239 - 308
Target Start/End: Original strand, 15133457 - 15133526
Alignment:
Q  239 gagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||| || ||||| |||||||||||||||| ||||| |||||||||||||||||||| ||||||||||    
T  15133457 gagagcttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggata 15133526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 45994598 - 45994661
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    ||||||||||||||| || ||||||||||| ||||||||| ||| |||||||||||||||||||    
T  45994598 cttagggagagcctgacgcccatttgggtctcacaatgctcgagagattagtctccgcagttgc 45994661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 233 - 297
Target Start/End: Complemental strand, 35334163 - 35334099
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||| ||||| | |||| |||||||||||||||||| || ||||||||||||||||||||||||    
T  35334163 cttagagagagtccgccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcg 35334099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 13948657 - 13948587
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcgga 303  Q
    ||||||||||| || |||||||||||  || ||||||||| |||||||||||||| ||||||||| |||||    
T  13948657 cttagggagagtctaccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 304
Target Start/End: Original strand, 31308373 - 31308444
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggag 304  Q
    |||||| |||| |||||||| |||| |||||||||||| ||||||||||||||  | |||||| ||||||||    
T  31308373 cttaggaagagtctgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggag 31308444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 13686681 - 13686741
Alignment:
Q  236 agggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    ||||||||  ||||||||||||||||| ||||| ||| ||| ||||||||||| |||||||    
T  13686681 agggagagtttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttgc 13686741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 297
Target Start/End: Complemental strand, 25768740 - 25768689
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    ||||| |||||||||| ||||||||||||| |||||||||||| || |||||    
T  25768740 tgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcg 25768689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 46250620 - 46250545
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||| ||| ||||||||| ||||||||||||||| ||||| || | |||||||||||| |||| | | ||||||||    
T  46250620 cttatggaaagcctgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggata 46250545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 16756158 - 16756253
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||||||||||| || ||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||    
T  16756158 cttagggagagcatgtcgtgcatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaaa 16756253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 42297507 - 42297432
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||    
T  42297507 cttagggagagtctgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggata 42297432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 245 - 328
Target Start/End: Original strand, 49071665 - 49071748
Alignment:
Q  245 ctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||||| |||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| ||||| ||||| ||||||    
T  49071665 ctgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaaa 49071748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 15642531 - 15642628
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaaga 330  Q
    |||||||||||  ||||| ||||||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||  ||||| ||| ||||||||||    
T  15642531 cttagggagagtttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 12035626 - 12035721
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||||||||| |||||| ||||||||||||||||||||| |||||||||||||| ||| ||||  | ||| |||| |||||| |||| |||||||    
T  12035626 cttagggagagtctgccgcccatttgggtcccacaatgctcgagggattagtctcagcaattgcacgtggatgatactcgatttacactcaaaaaa 12035721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 233 - 327
Target Start/End: Original strand, 36806687 - 36806781
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaa 327  Q
    ||||||||| | |||||| |||||||||| |||||||||| |||||||||||||| ||||||||  ||||||||||  || || |||||||||||    
T  36806687 cttagggagtgtctgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 28724748 - 28724823
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||| |||| |||||||||||||| |||| |||||| | |||||||||||||||||| ||||| ||||||||||    
T  28724748 cttaggaagagtctgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggata 28724823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 18428205 - 18428132
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||| |||| ||||||||||  ||||||||||| |||||||||||||| ||||||||| ||||||||||    
T  18428205 ttagggagagtctgctgtccatttggc-cccacaatgctcgagggattagtctctgcagttgcgcgcggaggata 18428132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 304
Target Start/End: Complemental strand, 9781054 - 9780983
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggag 304  Q
    ||||||||||| | |||| ||||||||||||||||||||| ||||||||||| |||| ||||| | ||||||    
T  9781054 cttagggagagtcggccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggag 9780983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 44913185 - 44913260
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||| |||||||||| |||||| || || |||||||    
T  44913185 cttagggagagcttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggata 44913260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 10367580 - 10367648
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcg 301  Q
    |||| |||||| || ||| |||||||||||| |||||||| || |||||| ||||||||||||||||||    
T  10367580 cttaaggagagtctaccgcccatttgggtccaacaatgctcgaaggattaatctccgcagttgcgtgcg 10367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 46864167 - 46864231
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||||||||| | ||||||||||||||||  ||||||| | |||||||||||||| |||||||||    
T  46864167 cttagggagaacttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcg 46864231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 22022196 - 22022259
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    |||||||||| | ||||  ||||||||||||||||||  | |||||||||||||||||||||||    
T  22022196 cttagggagaacttgccacccatttgggtcccacaatattcgagggattagtctccgcagttgc 22022259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 296
Target Start/End: Original strand, 10841093 - 10841157
Alignment:
Q  233 cttagggagagcctgccgtccattt-gggtcccacaatgcttgagggattagtctccgcagttgc 296  Q
    |||||||||| | ||||  |||||| ||||||||||||||||||||||||| | |||||||||||    
T  10841093 cttagggagaacttgcctcccatttagggtcccacaatgcttgagggattaatttccgcagttgc 10841157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Complemental strand, 39547429 - 39547334
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||||| ||| |||||| | |||| |||| ||||||| | || |||||| |||||||||||||| || |||||| | || || ||||||||||||    
T  39547429 cttagggggagtctgccgcctatttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaaa 39547334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 62; Significance: 2e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 234 - 327
Target Start/End: Original strand, 1642683 - 1642776
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaa 327  Q
    |||||||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||| ||||| ||||| |||||    
T  1642683 ttagggagagtctaccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 230 - 328
Target Start/End: Complemental strand, 48204379 - 48204281
Alignment:
Q  230 acccttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||||||||||||| || ||||||||||||| ||||||||||  |||||||||| |||||||||||| ||||||||||  ||||| ||||||||||||    
T  48204379 acccttagggagagcttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaaa 48204281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 309
Target Start/End: Original strand, 27763797 - 27763873
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    ||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||| || ||||||||    
T  27763797 cttagggagagtctgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatat 27763873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 233 - 309
Target Start/End: Complemental strand, 30996030 - 30995954
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    ||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  30996030 cttagggagagtctgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatat 30995954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 38331204 - 38331299
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    ||||| |||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||  ||||| ||| ||||||||    
T  38331204 cttagagagagcttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 20861324 - 20861399
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| |||||||||| ||| |||||| |||||||||||||||||||||| | ||||||||||    
T  20861324 cttagggagagcctgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggata 20861399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 244 - 308
Target Start/End: Original strand, 8757431 - 8757495
Alignment:
Q  244 cctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||| | ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||    
T  8757431 cctgccgcctatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggata 8757495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 57 - 140
Target Start/End: Original strand, 50406650 - 50406732
Alignment:
Q  57 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 140  Q
    ||||||||||||| ||||  ||||||||| |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  50406650 tgtcattttacaaatatatctctttcttttctctcattttctattctctttcacttaaaccaaacaa-ccacaaaatcatatca 50406732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 328
Target Start/End: Original strand, 25224775 - 25224870
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaa 328  Q
    |||| ||||| | ||||| |||||| ||||||||||||||  ||||||||||||||||||||||  ||||||||||  || || ||||||||||||    
T  25224775 cttaaggagaacttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaaa 25224870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 55123173 - 55123248
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| |||   ||||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||    
T  55123173 cttagggagagcttgctacccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggata 55123248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Original strand, 39950289 - 39950363
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||  ||| ||| ||||||| ||| |||||||| || |||||||||||||||||||| |||||||||||    
T  39950289 ttagggagaatctgtcgttcatttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggata 39950363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 233 - 330
Target Start/End: Original strand, 46725501 - 46725597
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgattgacacccaaaaaaga 330  Q
    |||||||| ||  ||| |||||| ||||||| |||||||||||||||||||||||  ||||| || |||||||||| | | || ||||||||||||||    
T  46725501 cttagggatagtttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaaaga 46725597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 265 - 308
Target Start/End: Complemental strand, 40318482 - 40318439
Alignment:
Q  265 acaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||| | |||||||||||||||||||||||| ||||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggata 40318439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 309
Target Start/End: Complemental strand, 44941316 - 44941254
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    ||||| |||||||| |||||  ||||| |||| ||||||||||||||||||| |||||||||||    
T  44941316 tgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatat 44941254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 288
Target Start/End: Original strand, 15446085 - 15446127
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctcc 288  Q
    ||||||||||||||||| ||||||||| || ||||||||||||    
T  15446085 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 15283160 - 15283200
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtct 286  Q
    ||||| ||||||||||||||||||||| ||| |||||||||    
T  15283160 tgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 297
Target Start/End: Original strand, 40294688 - 40294752
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcg 297  Q
    |||||||| ||| |||||  ||||||  ||||||||| || || |||||||||||||||||||||    
T  40294688 cttagggaaagcttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcg 40294752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 56; Significance: 7e-23; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 26407 - 26482
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||| ||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||    
T  26407 cttagggagagcctgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggata 26482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 7e-23; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 12836962 - 12836887
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  12836962 cttagggagagctcgccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggata 12836887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 9536844 - 9536919
Alignment:
Q  234 ttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatat 309  Q
    ||||||||||||| |||||||||| | | |||||||||| ||||||||||||||||||||||||  ||||||||||    
T  9536844 ttagggagagcctaccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggatat 9536919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 12411224 - 12411299
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||| |||| |||||| ||||||  ||||||||||||||||||||||||||||| |||||||| |||| |||||    
T  12411224 cttaggaagagtctgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggata 12411299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 31412198 - 31412280
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgatt 315  Q
    ||||||||||| |||||| |||||||||| |||||||||| |||  |||||||||| ||||||||  |||||||||| |||||    
T  31412198 cttagggagagtctgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggatatccgatt 31412280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 308
Target Start/End: Original strand, 28099335 - 28099394
Alignment:
Q  249 cgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||| || ||| |||||| |||||||||||||||||||||||| ||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggata 28099394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 233 - 301
Target Start/End: Original strand, 6062118 - 6062186
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcg 301  Q
    |||||| ||||| |||||| ||||||||||| |||| | | || |||||||||| ||||||||||||||    
T  6062118 cttaggaagagcttgccgttcatttgggtcctacaacgttcgatggattagtcttcgcagttgcgtgcg 6062186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 284
Target Start/End: Original strand, 423743 - 423782
Alignment:
Q  245 ctgccgtccatttgggtcccacaatgcttgagggattagt 284  Q
    |||||||||||||| ||||||||||||| |||||||||||    
T  423743 ctgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 315
Target Start/End: Original strand, 1534328 - 1534408
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggatattcgatt 315  Q
    |||||||||||| || || ||||||| ||| ||||||||| |||| |||  |||||||||||||  ||||||||||| |||||    
T  1534328 cttagggagagcttgtcgcccatttgagtcgcacaatgctcgaggaattgatctccgcagttgc--gcggaggatatccgatt 1534408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 21028894 - 21028839
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcg 301  Q
    ||||| |||||||||| |||||| |||  ||||||||||||||||||||| |||||    
T  21028894 tgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtgtgcg 21028839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 301
Target Start/End: Complemental strand, 21029031 - 21028976
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcg 301  Q
    ||||| |||||||||| |||||| |||  ||||||||||||||||||||| |||||    
T  21029031 tgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtgtgcg 21028976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Original strand, 21910281 - 21910355
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    ||||| ||||| ||||||  ||||| ||||||||||| ||  ||||||||||||||||||||||  ||||||||||    
T  21910281 cttagagagagtctgccgctcatttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggata 21910355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 233 - 308
Target Start/End: Complemental strand, 27290 - 27215
Alignment:
Q  233 cttagggagagcctgccgtccatttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||| ||||| |||||||| || ||| ||||| ||||||||||||| |||||||||| ||||||||||    
T  27290 cttagggagagcttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggata 27215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 308
Target Start/End: Complemental strand, 29197 - 29142
Alignment:
Q  253 catttgggtcccacaatgcttgagggattagtctccgcagttgcgtgcggaggata 308  Q
    |||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggata 29142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 246 - 288
Target Start/End: Complemental strand, 16107 - 16065
Alignment:
Q  246 tgccgtccatttgggtcccacaatgcttgagggattagtctcc 288  Q
    ||||||||||||||||| ||||||||| || ||||||||||||    
T  16107 tgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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