View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_30 (Length: 281)
Name: NF0610_low_30
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 12699176 - 12698936
Alignment:
| Q |
30 |
agcgacatgtccttcaacaacgtggatttcacatccgattccaaagttactatagatgctttccatcaagctcaggttgatgttacgaagatagtcaaat |
129 |
Q |
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| T |
12699176 |
agcgacatgtccttcaacaacgtggatttcacatctgattccaaagttactatagatgctttccatcaggc--aggttgatgttacggagatagtcaaat |
12699079 |
T |
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| Q |
130 |
tagatccgtgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagttctatagacgacaaacaaatgaggtagctcccattctggtaggg |
229 |
Q |
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| T |
12699078 |
tagatccgtgtgtcgacatttgttcacttcacaatttacaaactccaagggcgagttctatagacgacaaacaaatgaggtagctcacattctggtaggg |
12698979 |
T |
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| Q |
230 |
ttgccacatcattagctagttccactacttagtataatctacc |
272 |
Q |
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| T |
12698978 |
ttgccacatcattagctagttccactacttattataatgtacc |
12698936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 30449706 - 30449524
Alignment:
| Q |
33 |
gacatgtccttcaacaacgtggatttcacatccgattccaaagttactatagatgctttccatcaagctcaggttgatgttacgaaga-tagtcaaatta |
131 |
Q |
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|||||||||||| | || ||||| |||||||| |||||||||||| ||||||||||||| |||| | | |||||| |||||| ||| | |||| || | |
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| T |
30449706 |
gacatgtccttcgataatgtggacttcacatctaattccaaagttattatagatgctttcaatcaggaacgggttga-gttacggagactggtcacataa |
30449608 |
T |
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| Q |
132 |
gatccgtgtgtcgacatttgttcacttcacaatttacaaactcgaagggcgagttctatagacgacaaacaaatgaggtagctc |
215 |
Q |
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| T |
30449607 |
tctctgtgtgtcgacgtttgtttacatcacacttcacaaactcgaaggttgagtttaatatgcaacaagcaaatgaggtagctc |
30449524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 8274741 - 8274774
Alignment:
| Q |
227 |
gggttgccacatcattagctagttccactactta |
260 |
Q |
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| T |
8274741 |
gggttgccacattattagctagttccactactta |
8274774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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