View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_37 (Length: 252)
Name: NF0610_low_37
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_37 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 15039078 - 15038837
Alignment:
| Q |
1 |
ttactaattacactcgtgaaaatatgttggaaaatgaggtagaatttggtctgccaaataagcattttggtgggttcttcaactatcgtgagcaaacaag |
100 |
Q |
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| T |
15039078 |
ttactaattacactcgtgaaaatatgttggaaaatgaggtagaatttggtctgccaaataagcattttggtgggttcttcaactatcgtgtgcaaacaag |
15038979 |
T |
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| Q |
101 |
ctgtgattagattattcatggtttgttatgttattttcatttggtcttcacaacttgcattattctggtgatgtgaaaatgaaacttatatgatcagtta |
200 |
Q |
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| T |
15038978 |
ctgtgattagattattcatggtttgttatgttattttcatttggtcttgacaacttgcattattatggtgatgtgaaaatgaaacttatatgatcagtta |
15038879 |
T |
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| Q |
201 |
aacttaaatcccaattatttaacttaaagtgaatcttctctg |
242 |
Q |
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| T |
15038878 |
aacttaaatcccaattatttaacttaaagtgaatcttctctg |
15038837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 15029617 - 15029568
Alignment:
| Q |
4 |
ctaattacactcgtgaaaatatgttggaaaatgaggtagaatttggtctg |
53 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15029617 |
ctaattacactcatgaaaatatgttggaaaatgaggtagaatttggtctg |
15029568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 15008316 - 15008269
Alignment:
| Q |
6 |
aattacactcgtgaaaatatgttggaaaatgaggtagaatttggtctg |
53 |
Q |
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| T |
15008316 |
aattacactcatgaaaatatgttggaaaatgtggtagaatttggtctg |
15008269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 15022433 - 15022386
Alignment:
| Q |
6 |
aattacactcgtgaaaatatgttggaaaatgaggtagaatttggtctg |
53 |
Q |
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|||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
15022433 |
aattacactcatgaaaatatgttggaaaatgtggtagaatttggtctg |
15022386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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