View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_low_4 (Length: 616)

Name: NF0610_low_4
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_low_4
NF0610_low_4
[»] chr3 (5 HSPs)
chr3 (1-447)||(33227736-33228188)
chr3 (100-143)||(3660173-3660216)
chr3 (459-517)||(14623247-14623305)
chr3 (97-141)||(11890306-11890350)
chr3 (101-141)||(24730929-24730969)
[»] chr6 (5 HSPs)
chr6 (84-143)||(13027971-13028030)
chr6 (459-513)||(11296983-11297037)
chr6 (67-143)||(35233002-35233078)
chr6 (100-143)||(13599133-13599176)
chr6 (268-312)||(12646364-12646408)
[»] chr2 (1 HSPs)
chr2 (100-143)||(39012076-39012119)
[»] chr1 (1 HSPs)
chr1 (456-514)||(31325132-31325190)
[»] chr8 (1 HSPs)
chr8 (292-371)||(26586971-26587050)
[»] chr5 (1 HSPs)
chr5 (455-513)||(7817043-7817101)
[»] chr4 (1 HSPs)
chr4 (97-143)||(7588187-7588233)
[»] chr7 (1 HSPs)
chr7 (97-141)||(27782193-27782237)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 33227736 - 33228188
Alignment:
Q  1 atttcaccacgaccaatcaactcc------acttagatgacctttcatctctcatcaaccccattaccaaagaactcgatgaatcctttcaaagctccag 94  Q
    ||||| ||||||||||||||||||      ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33227736 atttcgccacgaccaatcaactccgcattgacttagatggcctttcatctctcatcaactccattaccaaagaactcgatgaatcctttcaaagctccag 33227835  T
Q  95 aacctgatggcttccaatgcatattctttaagaaatattggcacattatgagcgatgacatctttaacttggttaataatgtcttttcctcaagttacgt 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33227836 aacctgatggcttccaatgcatattctttaagaaatattggcacattatgagcgatgacatctttaacttggttaataatgtcttttcctcaagttacgt 33227935  T
Q  195 tcatccatctatctctaatacccttatacataaagttgacattcattccaccacctttaagaacctacgcccaattagcatttgcaacattgtttacaaa 294  Q
    | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  33227936 tgatccatctatctctaatacccttatacctaaagttgacattcattccaccacctttaagaacctatgcccaattagcatttgcaacattgtttacaaa 33228035  T
Q  295 atcataaacaaagtccttattaatcgcctccgccccctccgtgacattattattggtccctaccaaatcagttttctactgggtagggtacttcttacta 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33228036 atcataaacaaagtccttattaatcgcctccgccccctccgtgacattattattggtcccttccaaatcaattttctactgggtagggtacttcttacta 33228135  T
Q  395 tgttattattttgctggaaatatttcacgacatgcagaagtccaagaataata 447  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33228136 tgttattattttgctggaaatatttcacgacatgcagaagtccaagaataata 33228188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 3660216 - 3660173
Alignment:
Q  100 gatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  3660216 gatggcttccaatgcatattttttaagcaatattggcacattat 3660173  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 14623305 - 14623247
Alignment:
Q  459 gctttcaaattttacttggagaaaccttttgacaacgtcaattgggatttccttaagga 517  Q
    ||||||||| || | || |||||| |||||||||| ||||||||||||||||| |||||    
T  14623305 gctttcaaacttgatttagagaaagcttttgacaaagtcaattgggatttcctcaagga 14623247  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 11890350 - 11890306
Alignment:
Q  97 cctgatggcttccaatgcatattctttaagaaatattggcacatt 141  Q
    |||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  11890350 cctgatggtttccattgcattttctttaagcaatattggcacatt 11890306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 101 - 141
Target Start/End: Original strand, 24730929 - 24730969
Alignment:
Q  101 atggcttccaatgcatattctttaagaaatattggcacatt 141  Q
    ||||||||||||||||||| |||||  ||||||||||||||    
T  24730929 atggcttccaatgcatattttttaaacaatattggcacatt 24730969  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 143
Target Start/End: Complemental strand, 13028030 - 13027971
Alignment:
Q  84 caaagctccagaacctgatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    ||||||||| | ||| |||||||||||||| ||||| |||||| ||||||||||||||||    
T  13028030 caaagctcctggaccagatggcttccaatgtatattttttaagcaatattggcacattat 13027971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 513
Target Start/End: Complemental strand, 11297037 - 11296983
Alignment:
Q  459 gctttcaaattttacttggagaaaccttttgacaacgtcaattgggatttcctta 513  Q
    ||||||||  || ||||||||||| ||||||||||||||||||||||||| ||||    
T  11297037 gctttcaagcttgacttggagaaagcttttgacaacgtcaattgggattttctta 11296983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 35233002 - 35233078
Alignment:
Q  67 aactcgatgaatcctttcaaagctccagaacctgatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    ||||| ||||| || | ||||||||||| ||| ||||| ||||| ||||||||||| ||| |||||||||| |||||    
T  35233002 aactccatgaaaccctacaaagctccaggaccagatggtttccattgcatattcttcaagcaatattggcatattat 35233078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 13599133 - 13599176
Alignment:
Q  100 gatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    |||||||||||||||||||| |||||  ||||||||||||||||    
T  13599133 gatggcttccaatgcatattttttaaacaatattggcacattat 13599176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 268 - 312
Target Start/End: Complemental strand, 12646408 - 12646364
Alignment:
Q  268 attagcatttgcaacattgtttacaaaatcataaacaaagtcctt 312  Q
    |||||| ||||||||||||| ||||||||||| | ||||||||||    
T  12646408 attagcctttgcaacattgtctacaaaatcattaccaaagtcctt 12646364  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 100 - 143
Target Start/End: Original strand, 39012076 - 39012119
Alignment:
Q  100 gatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    |||||||||||||||||||| |||||| ||||||||||||||||    
T  39012076 gatggcttccaatgcatattttttaagcaatattggcacattat 39012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 456 - 514
Target Start/End: Complemental strand, 31325190 - 31325132
Alignment:
Q  456 gtagctttcaaattttacttggagaaaccttttgacaacgtcaattgggatttccttaa 514  Q
    |||||||||||| || || |||||||| ||||||| || ||||||||||||||||||||    
T  31325190 gtagctttcaaacttgacctggagaaagcttttgataatgtcaattgggatttccttaa 31325132  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 292 - 371
Target Start/End: Original strand, 26586971 - 26587050
Alignment:
Q  292 aaaatcataaacaaagtccttattaatcgcctccgccccctccgtgacattattattggtccctaccaaatcagttttct 371  Q
    |||||||| | |||||||||| |  |||||||| | ||  ||| | ||| ||||||||||||||||||||||||||||||    
T  26586971 aaaatcatcaccaaagtccttgtccatcgcctcagaccgatccttaacaatattattggtccctaccaaatcagttttct 26587050  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 455 - 513
Target Start/End: Original strand, 7817043 - 7817101
Alignment:
Q  455 tgtagctttcaaattttacttggagaaaccttttgacaacgtcaattgggatttcctta 513  Q
    |||||| |||||| || || |||| ||| |||| |||||||||||||||||||||||||    
T  7817043 tgtagcattcaaacttgacctggaaaaagctttcgacaacgtcaattgggatttcctta 7817101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 7588233 - 7588187
Alignment:
Q  97 cctgatggcttccaatgcatattctttaagaaatattggcacattat 143  Q
    ||||||||||||||||| || || |||||| ||||||||||||||||    
T  7588233 cctgatggcttccaatgtatcttttttaagcaatattggcacattat 7588187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 27782237 - 27782193
Alignment:
Q  97 cctgatggcttccaatgcatattctttaagaaatattggcacatt 141  Q
    |||||||| ||||| ||||| ||||||||| ||||||||||||||    
T  27782237 cctgatggtttccattgcattttctttaagcaatattggcacatt 27782193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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