View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_low_42 (Length: 232)

Name: NF0610_low_42
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_low_42
NF0610_low_42
[»] chr8 (1 HSPs)
chr8 (56-139)||(39566866-39566948)
[»] chr5 (2 HSPs)
chr5 (56-139)||(4922057-4922139)
chr5 (77-122)||(8568610-8568655)
[»] chr7 (2 HSPs)
chr7 (61-139)||(25102276-25102354)
chr7 (56-123)||(36030932-36031000)
[»] chr4 (2 HSPs)
chr4 (56-139)||(14062111-14062193)
chr4 (56-139)||(29696679-29696761)
[»] chr3 (1 HSPs)
chr3 (56-139)||(50406650-50406732)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 39566948 - 39566866
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||    
T  39566948 tgtcattttacaagtatacttctttctttcctctcactttctattcactttcacttcaaccaaacaa-ccgcaaaatcatatca 39566866  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 4922057 - 4922139
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    |||||||||| ||||||||||||||||||  ||||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  4922057 tgtcattttataagtatacttctttcttttttctcattttctattcactttcacttcaaccaaacaa-ccacaaaatcatatca 4922139  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 8568610 - 8568655
Alignment:
Q  77 ctttctttcctctcaatttctattcactttcacttcaaccaaacaa 122  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||    
T  8568610 ctttctttcctttcactttctattcactttcacttctaccaaacaa 8568655  T

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Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 61 - 139
Target Start/End: Original strand, 25102276 - 25102354
Alignment:
Q  61 ttttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    |||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  25102276 tttttcaagtatacatctttctttcctctcattttctattcactttcacttcaaccaaacaaaccagaaaatcatatca 25102354  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 123
Target Start/End: Original strand, 36030932 - 36031000
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcactt-caaccaaacaac 123  Q
    |||||||||| || |||||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  36030932 tgtcattttataaatatacttctttctttcttctcactttctattcactttcacttaaaaccaaacaac 36031000  T

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Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 14062111 - 14062193
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    |||||||||| |||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  14062111 tgtcattttataagtatacttctttctgtcctctcattttctattcactttcactacaaacaaacaa-ccacaaaatcatatca 14062193  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 29696761 - 29696679
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    |||||||||| || ||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  29696761 tgtcattttataaatatacttttttctttcctctcactttctattcactttcacttcaaccaaacaa-ccataaaatcatatca 29696679  T

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Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 139
Target Start/End: Original strand, 50406650 - 50406732
Alignment:
Q  56 tgtcattttacaagtatacttctttctttcctctcaatttctattcactttcacttcaaccaaacaacccacaaaatcatatca 139  Q
    ||||||||||||| ||||  ||||||||| |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||    
T  50406650 tgtcattttacaaatatatctctttcttttctctcattttctattctctttcacttaaaccaaacaa-ccacaaaatcatatca 50406732  T

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