View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_45 (Length: 209)
Name: NF0610_low_45
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_45 |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 40126624 - 40126824
Alignment:
| Q |
1 |
gggtaaactttaatacaaatggtattaattggtgcattacatgttttctataaaataatacatgagattctctgcttgtgttgttcagcaataatatata |
100 |
Q |
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| T |
40126624 |
gggtaaactttaatacaaatggtattaattggtgcattacatgttttctataaaataatacatgagattctctgcttgtgttgttcagcaataatatata |
40126723 |
T |
|
| Q |
101 |
gtg---tgctatgatgatgaattaannnnnnnggttaaattcaattttaaaataattttgttaatataatgtcatcatctaccaaagcctaatttaaata |
197 |
Q |
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||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40126724 |
gtgtgctgctatgatgatgaattaatttttttggttaaattcaattttaaaataattttgttaatataatgtcatcatctaccaaagcctaatttaaata |
40126823 |
T |
|
| Q |
198 |
t |
198 |
Q |
| |
|
| |
|
|
| T |
40126824 |
t |
40126824 |
T |
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