View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_low_47 (Length: 208)

Name: NF0610_low_47
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_low_47
NF0610_low_47
[»] chr8 (1 HSPs)
chr8 (99-182)||(39566866-39566948)
[»] chr5 (2 HSPs)
chr5 (99-182)||(4922057-4922139)
chr5 (116-161)||(8568610-8568655)
[»] chr7 (2 HSPs)
chr7 (99-169)||(25102284-25102354)
chr7 (115-182)||(36030932-36031000)
[»] chr4 (2 HSPs)
chr4 (99-182)||(14062111-14062193)
chr4 (99-182)||(29696679-29696761)
[»] chr3 (1 HSPs)
chr3 (99-182)||(50406650-50406732)


Alignment Details
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 39566866 - 39566948
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    ||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  39566866 tgatatgattttgcgg-ttgtttggttgaagtgaaagtgaatagaaagtgagaggaaagaaagaagtatacttgtaaaatgaca 39566948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 4922139 - 4922057
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||||| | ||||||||||    
T  4922139 tgatatgattttgtgg-ttgtttggttgaagtgaaagtgaatagaaaatgagaaaaaagaaagaagtatacttataaaatgaca 4922057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 8568655 - 8568610
Alignment:
Q  116 ttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaag 161  Q
    ||||||||| |||||||||||||||||||| ||| |||||||||||    
T  8568655 ttgtttggtagaagtgaaagtgaatagaaagtgaaaggaaagaaag 8568610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 25102354 - 25102284
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatac 169  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  25102354 tgatatgattttctggtttgtttggttgaagtgaaagtgaatagaaaatgagaggaaagaaagatgtatac 25102284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 182
Target Start/End: Complemental strand, 36031000 - 36030932
Alignment:
Q  115 gttgtttggttg-aagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    |||||||||||  ||||||||||||||||||| ||||| ||||||||||||||||  | ||||||||||    
T  36031000 gttgtttggttttaagtgaaagtgaatagaaagtgagaagaaagaaagaagtatatttataaaatgaca 36030932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 14062193 - 14062111
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||||| |||||||| |||||||||||||| | ||||||||||    
T  14062193 tgatatgattttgtgg-ttgtttgtttgtagtgaaagtgaatagaaaatgagaggacagaaagaagtatacttataaaatgaca 14062111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Original strand, 29696679 - 29696761
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||  | ||||||||||    
T  29696679 tgatatgattttatgg-ttgtttggttgaagtgaaagtgaatagaaagtgagaggaaagaaaaaagtatatttataaaatgaca 29696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 50406732 - 50406650
Alignment:
Q  99 tgatatgattttgtgggttgtttggttgaagtgaaagtgaatagaaattgagaggaaagaaagaagtatacctgtaaaatgaca 182  Q
    |||||||||||||||| |||||||||| ||||||||| ||||||||| |||||| |||||||||  ||||  ||||||||||||    
T  50406732 tgatatgattttgtgg-ttgtttggtttaagtgaaagagaatagaaaatgagagaaaagaaagagatatatttgtaaaatgaca 50406650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2885 times since January 2019
Visitors: 3831