View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0610_low_50 (Length: 203)

Name: NF0610_low_50
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0610_low_50
NF0610_low_50
[»] chr6 (16 HSPs)
chr6 (6-108)||(10077211-10077313)
chr6 (6-108)||(31979462-31979564)
chr6 (4-108)||(18232794-18232898)
chr6 (1-108)||(31936536-31936643)
chr6 (4-108)||(5017513-5017616)
chr6 (6-101)||(5572287-5572382)
chr6 (1-92)||(31086514-31086605)
chr6 (26-108)||(22963649-22963731)
chr6 (26-108)||(23824662-23824744)
chr6 (1-108)||(4629902-4630010)
chr6 (1-92)||(5757519-5757611)
chr6 (1-92)||(21356000-21356092)
chr6 (56-107)||(21801445-21801496)
chr6 (9-76)||(9183007-9183075)
chr6 (1-101)||(22708974-22709074)
chr6 (9-76)||(16569146-16569214)
[»] chr3 (36 HSPs)
chr3 (6-108)||(1417526-1417628)
chr3 (1-113)||(21711167-21711279)
chr3 (6-108)||(26298937-26299039)
chr3 (6-108)||(1736341-1736443)
chr3 (6-107)||(18552919-18553020)
chr3 (8-108)||(37466240-37466340)
chr3 (1-108)||(3716033-3716140)
chr3 (6-108)||(3328392-3328494)
chr3 (1-108)||(6794744-6794851)
chr3 (6-108)||(48438163-48438265)
chr3 (8-108)||(40592820-40592921)
chr3 (4-108)||(24695198-24695302)
chr3 (1-108)||(8370517-8370625)
chr3 (6-113)||(30709826-30709934)
chr3 (6-108)||(40844601-40844702)
chr3 (1-94)||(36029056-36029149)
chr3 (1-108)||(25795729-25795837)
chr3 (1-101)||(27452914-27453014)
chr3 (1-92)||(27974983-27975075)
chr3 (1-106)||(33386697-33386803)
chr3 (6-70)||(47923942-47924006)
chr3 (1-101)||(27986477-27986577)
chr3 (1-92)||(39040023-39040116)
chr3 (1-107)||(16264299-16264406)
chr3 (32-107)||(34491359-34491435)
chr3 (1-101)||(32143277-32143377)
chr3 (1-108)||(4386958-4387066)
chr3 (1-101)||(26928632-26928731)
chr3 (9-76)||(29813187-29813255)
chr3 (9-76)||(51398938-51399006)
chr3 (21-92)||(35925446-35925519)
chr3 (78-107)||(8126651-8126680)
chr3 (9-69)||(23410312-23410373)
chr3 (9-76)||(29810992-29811060)
chr3 (9-76)||(40734622-40734690)
chr3 (9-76)||(40735507-40735575)
[»] chr7 (33 HSPs)
chr7 (1-108)||(29159752-29159859)
chr7 (1-108)||(9190049-9190156)
chr7 (6-113)||(33332496-33332603)
chr7 (6-108)||(20284038-20284140)
chr7 (6-108)||(2647742-2647844)
chr7 (6-108)||(4796713-4796815)
chr7 (1-106)||(2580338-2580446)
chr7 (6-108)||(46516356-46516458)
chr7 (6-108)||(23403059-23403161)
chr7 (10-107)||(21988857-21988955)
chr7 (8-108)||(9185213-9185311)
chr7 (1-108)||(49091611-49091717)
chr7 (43-108)||(9235638-9235703)
chr7 (1-107)||(21983233-21983340)
chr7 (6-100)||(35960773-35960867)
chr7 (6-108)||(55897-55998)
chr7 (54-107)||(22270143-22270196)
chr7 (1-92)||(44848725-44848817)
chr7 (9-86)||(30814560-30814637)
chr7 (10-108)||(47263627-47263725)
chr7 (1-108)||(5817311-5817418)
chr7 (9-76)||(27347941-27348009)
chr7 (1-69)||(28617266-28617334)
chr7 (9-76)||(48489555-48489623)
chr7 (20-92)||(2479301-2479374)
chr7 (9-69)||(41317417-41317478)
chr7 (9-76)||(4586285-4586353)
chr7 (9-76)||(14069809-14069877)
chr7 (9-76)||(14379837-14379905)
chr7 (1-70)||(18408749-18408819)
chr7 (9-76)||(31732945-31733013)
chr7 (9-76)||(41648987-41649055)
chr7 (9-76)||(47676112-47676180)
[»] chr2 (34 HSPs)
chr2 (1-108)||(10445485-10445592)
chr2 (13-108)||(16940262-16940357)
chr2 (13-108)||(17010927-17011022)
chr2 (4-108)||(20522169-20522273)
chr2 (1-108)||(34682375-34682482)
chr2 (6-108)||(39482880-39482982)
chr2 (4-108)||(17865152-17865256)
chr2 (4-108)||(33528665-33528769)
chr2 (1-108)||(8040009-8040116)
chr2 (6-108)||(33118085-33118187)
chr2 (1-102)||(21629899-21629999)
chr2 (6-86)||(14699053-14699133)
chr2 (1-108)||(13569278-13569384)
chr2 (1-108)||(31055991-31056100)
chr2 (8-92)||(34388823-34388907)
chr2 (1-108)||(23078511-23078619)
chr2 (14-92)||(36757816-36757896)
chr2 (1-108)||(8390191-8390297)
chr2 (1-108)||(10707293-10707399)
chr2 (1-92)||(28259218-28259310)
chr2 (1-74)||(1345582-1345657)
chr2 (9-76)||(38312364-38312432)
chr2 (8-113)||(2869741-2869847)
chr2 (38-108)||(35397460-35397530)
chr2 (9-74)||(36773686-36773752)
chr2 (1-92)||(42039710-42039803)
chr2 (9-76)||(723720-723788)
chr2 (9-76)||(34139746-34139814)
chr2 (9-75)||(17057346-17057413)
chr2 (9-75)||(17085329-17085396)
chr2 (1-70)||(25398480-25398551)
chr2 (10-74)||(11151569-11151634)
chr2 (6-54)||(2838076-2838124)
chr2 (1-70)||(3491736-3491806)
[»] scaffold0006 (3 HSPs)
scaffold0006 (6-108)||(5632-5734)
scaffold0006 (6-108)||(2441-2543)
scaffold0006 (1-101)||(133321-133422)
[»] chr1 (29 HSPs)
chr1 (6-108)||(13598347-13598449)
chr1 (8-108)||(775621-775721)
chr1 (6-108)||(29651760-29651862)
chr1 (1-105)||(47703977-47704081)
chr1 (1-108)||(19072876-19072984)
chr1 (1-108)||(19120766-19120874)
chr1 (6-106)||(47098870-47098970)
chr1 (1-108)||(9476210-9476317)
chr1 (1-108)||(27104413-27104520)
chr1 (6-106)||(47102887-47102987)
chr1 (6-107)||(16124562-16124664)
chr1 (1-92)||(26644938-26645031)
chr1 (1-106)||(32889389-32889495)
chr1 (1-92)||(3281671-3281764)
chr1 (1-92)||(37069733-37069826)
chr1 (1-101)||(13604664-13604765)
chr1 (9-76)||(37503533-37503601)
chr1 (1-92)||(21536610-21536703)
chr1 (56-107)||(50521199-50521250)
chr1 (9-76)||(3156989-3157057)
chr1 (9-76)||(28220202-28220270)
chr1 (9-74)||(28265532-28265598)
chr1 (1-58)||(1055040-1055096)
chr1 (64-113)||(17345623-17345672)
chr1 (32-76)||(30476422-30476467)
chr1 (9-76)||(834143-834211)
chr1 (9-76)||(28223397-28223465)
chr1 (9-76)||(44455284-44455352)
chr1 (9-76)||(49918474-49918542)
[»] chr8 (20 HSPs)
chr8 (6-107)||(4696642-4696743)
chr8 (1-108)||(26403271-26403378)
chr8 (1-108)||(9765860-9765968)
chr8 (6-107)||(23799623-23799724)
chr8 (1-108)||(19752435-19752542)
chr8 (6-108)||(5702529-5702631)
chr8 (1-92)||(19175795-19175888)
chr8 (1-108)||(6127169-6127277)
chr8 (29-108)||(6813631-6813711)
chr8 (1-92)||(4455991-4456084)
chr8 (1-92)||(7412304-7412397)
chr8 (9-76)||(4731782-4731850)
chr8 (9-76)||(15212910-15212978)
chr8 (1-70)||(31071270-31071342)
chr8 (9-76)||(4733830-4733898)
chr8 (9-76)||(33352274-33352342)
chr8 (9-76)||(43036547-43036615)
chr8 (1-70)||(1261995-1262066)
chr8 (1-57)||(18870603-18870658)
chr8 (9-76)||(27811402-27811470)
[»] chr4 (31 HSPs)
chr4 (6-110)||(39245941-39246045)
chr4 (8-108)||(42599622-42599722)
chr4 (6-108)||(10047328-10047430)
chr4 (1-108)||(3796560-3796668)
chr4 (1-108)||(38152480-38152586)
chr4 (1-108)||(36315270-36315377)
chr4 (1-108)||(36329479-36329586)
chr4 (1-108)||(24333758-24333865)
chr4 (6-108)||(5269237-5269339)
chr4 (26-108)||(54867133-54867215)
chr4 (7-108)||(25862069-25862170)
chr4 (1-107)||(5143209-5143315)
chr4 (1-107)||(5147627-5147733)
chr4 (20-108)||(3777499-3777586)
chr4 (1-92)||(16623334-16623426)
chr4 (9-108)||(16630729-16630828)
chr4 (1-92)||(5396712-5396805)
chr4 (6-108)||(6743461-6743563)
chr4 (1-101)||(31985675-31985774)
chr4 (9-76)||(12739526-12739594)
chr4 (9-76)||(26175612-26175680)
chr4 (9-76)||(34570390-34570458)
chr4 (10-92)||(8689533-8689617)
chr4 (9-76)||(12743901-12743969)
chr4 (9-76)||(12745290-12745358)
chr4 (9-74)||(9927436-9927502)
chr4 (9-74)||(48893616-48893682)
chr4 (78-107)||(21688441-21688470)
chr4 (9-76)||(5429803-5429871)
chr4 (1-57)||(45357325-45357380)
chr4 (9-76)||(54199883-54199950)
[»] scaffold0148 (1 HSPs)
scaffold0148 (1-108)||(10678-10785)
[»] chr5 (26 HSPs)
chr5 (1-108)||(17004001-17004108)
chr5 (6-108)||(42127456-42127558)
chr5 (1-105)||(31300637-31300741)
chr5 (6-108)||(24553552-24553654)
chr5 (1-97)||(11917013-11917109)
chr5 (6-108)||(28832208-28832310)
chr5 (6-108)||(19588695-19588797)
chr5 (1-108)||(3880249-3880355)
chr5 (1-92)||(9353373-9353465)
chr5 (1-108)||(6741800-6741908)
chr5 (1-106)||(15464482-15464588)
chr5 (1-92)||(36932391-36932483)
chr5 (53-108)||(11181925-11181980)
chr5 (1-108)||(12084216-12084324)
chr5 (1-92)||(14520193-14520286)
chr5 (1-85)||(10281722-10281807)
chr5 (32-107)||(28278463-28278539)
chr5 (43-107)||(38747163-38747227)
chr5 (9-76)||(28750631-28750699)
chr5 (1-106)||(33030981-33031088)
chr5 (9-76)||(5887410-5887478)
chr5 (9-76)||(19806487-19806555)
chr5 (9-76)||(32636948-32637016)
chr5 (1-70)||(35387647-35387718)
chr5 (9-69)||(8565930-8565990)
chr5 (9-76)||(30682899-30682966)
[»] scaffold0140 (1 HSPs)
scaffold0140 (1-106)||(8460-8566)
[»] scaffold0176 (1 HSPs)
scaffold0176 (4-108)||(17212-17316)
[»] scaffold0036 (1 HSPs)
scaffold0036 (7-92)||(85648-85733)
[»] scaffold0087 (2 HSPs)
scaffold0087 (1-92)||(44002-44094)
scaffold0087 (6-92)||(36878-36966)
[»] scaffold0098 (1 HSPs)
scaffold0098 (1-92)||(45217-45309)
[»] scaffold0066 (1 HSPs)
scaffold0066 (9-76)||(20391-20459)


Alignment Details
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 10077211 - 10077313
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  10077211 tgctctctcccccagattaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 10077310  T
Q  106 tgc 108  Q
    |||    
T  10077311 tgc 10077313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 31979564 - 31979462
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  31979564 tgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctatttcattgcttatctttattgctttgatta 31979465  T
Q  106 tgc 108  Q
    |||    
T  31979464 tgc 31979462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 18232898 - 18232794
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||||||| ||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  18232898 gttgctctctcccccagattaggtcatattggaccgatttgagtcaacaatcttggtgtgtttgttcctctctttcatcgcttatctttattgctttgat 18232799  T
Q  104 tatgc 108  Q
    |||||    
T  18232798 tatgc 18232794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31936643 - 31936536
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||| ||| || || ||||||||||| |||| | |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  31936643 agagctgctctctctcccagactaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcctatctttcattgcttatctttattgcttt 31936544  T
Q  101 gattatgc 108  Q
    | ||||||    
T  31936543 gtttatgc 31936536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 5017513 - 5017616
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||||||  ||||| |||||||| || |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||  |||||||||    
T  5017513 gttgctctctcccctagattaggtcatatttgaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatcttt-gtgctttgat 5017611  T
Q  104 tatgc 108  Q
    |||||    
T  5017612 tatgc 5017616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 6 - 101
Target Start/End: Original strand, 5572287 - 5572382
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttg 101  Q
    ||||||||||||  ||||| ||||||||||| ||||||||||||||||||||||||||||||||| | ||| ||| ||||||| ||||||||||||    
T  5572287 tgctctctcccctagattaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcatttctttcactgcttatatttattgctttg 5572382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 31086514 - 31086605
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||||||||||||||||  |||||  ||||||||||  ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  31086514 agagttgctctctcccctagattagatcatattggactgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatcttt 31086605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 22963731 - 22963649
Alignment:
Q  26 gtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    ||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||    
T  22963731 gtcatattgcaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatagcttatctctattgctttgattatgc 22963649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 26 - 108
Target Start/End: Original strand, 23824662 - 23824744
Alignment:
Q  26 gtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    ||||||||| | |||| |||||||||||||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||    
T  23824662 gtcatattgcaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatagcttatctctattgctttgattatgc 23824744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 4630010 - 4629902
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttgg-tgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| |||||||| |||  ||||| |||||||||||  ||| || |||||||||||| | ||||||||||||| ||| ||||||||||||||||||||||    
T  4630010 agagctgctctcttccctagattaggtcatattggactgaactgagtcaacaatctttgatgtgtttgttcctttctttcattgcttatctttattgctt 4629911  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  4629910 tgattatgc 4629902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5757519 - 5757611
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  5757519 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattgcttatcttt 5757611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 21356092 - 21356000
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| |||||||||| || ||||| ||||||||||| |||| |||||||||||||  |||||||||||||| || ||| |||||||||||||||    
T  21356092 agagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgtttct-tctttcattgcttatcttt 21356000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 21801445 - 21801496
Alignment:
Q  56 ttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||    
T  21801445 ttggtgtgtttgttcctttctttcattacttatctttattgctttgattatg 21801496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 9183075 - 9183007
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||| || ||||||||||  ||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  9183075 tctctcctccagattatgtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtccctctct 9183007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22709074 - 22708974
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaa--tcttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| |||||  |||||||| | |||| | |||||||||  | ||||||||||||||| || || || ||||||||||||||||||    
T  22709074 agagctgctctctcccccagattagatcatattgaaccgaactaggtcaacaattttttggtgtgtttgttcttc-ctttc-ttgcttatctttattgct 22708977  T
Q  99 ttg 101  Q
    |||    
T  22708976 ttg 22708974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 16569146 - 16569214
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||| || ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  16569146 tctctcctccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 16569214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 1417526 - 1417628
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  1417526 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgctttgatta 1417625  T
Q  106 tgc 108  Q
    |||    
T  1417626 tgc 1417628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 21711279 - 21711167
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  21711279 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctctattgcttt 21711180  T
Q  101 gattatgcctatg 113  Q
    |||||||||||||    
T  21711179 gattatgcctatg 21711167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 26299039 - 26298937
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||    
T  26299039 tgctctctcccccagattatgtcatattgaaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcgttgcttatctttattgctttgatta 26298940  T
Q  106 tgc 108  Q
    |||    
T  26298939 tgc 26298937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 1736341 - 1736443
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  1736341 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatattggtgtgtttgttcctttctttcattgcttatgtttattgctttgatta 1736440  T
Q  106 tgc 108  Q
    |||    
T  1736441 tgc 1736443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 18552919 - 18553020
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||    
T  18552919 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtatttgttcctttctttcattgattatctttattgctttgatta 18553018  T
Q  106 tg 107  Q
    ||    
T  18553019 tg 18553020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 37466340 - 37466240
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||| ||||| ||||||||||| |||| || ||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  37466340 ctctctcccccagattaggtcatattggaccgaactgtgtcaacaatcttggtgtgtttgttcatttctttcattgcttatctttattgctttgattatg 37466241  T
Q  108 c 108  Q
    |    
T  37466240 c 37466240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3716033 - 3716140
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||| ||  ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |    
T  3716033 agagctgctctctctcctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgttgt 3716132  T
Q  101 gattatgc 108  Q
    ||||||||    
T  3716133 gattatgc 3716140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 3328392 - 3328494
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||| |  ||||| |||||||||||  ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  3328392 tgctctctcctctagattaggtcatattggaatgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgttttgatta 3328491  T
Q  106 tgc 108  Q
    |||    
T  3328492 tgc 3328494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 6794744 - 6794851
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||||||||  |||| ||||||||||| | ||  ||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||    
T  6794744 agagctgctctctcccccatattaggtcatattggacctaaccgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctctattgcttt 6794843  T
Q  101 gattatgc 108  Q
    ||||||||    
T  6794844 gattatgc 6794851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 48438265 - 48438163
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| | |||||| ||||||||||||||||||||| ||| |||||| |||||||||||| ||||||||    
T  48438265 tgctctctcccccagattaggtcatattggaccgaactaggtcaataatcttggtgtgtttgttcctttctgtcattgtttatctttattgttttgatta 48438166  T
Q  106 tgc 108  Q
    |||    
T  48438165 tgc 48438163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 40592820 - 40592921
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatctttattgctttgattat 106  Q
    ||||||||| | ||||| ||||||||||| |||| ||||||||||||||||||||||||||||| | ||| ||||||||||||| |||||||||||||||    
T  40592820 ctctctcccacagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttccttttctttcattgcttatctatattgctttgattat 40592919  T
Q  107 gc 108  Q
    ||    
T  40592920 gc 40592921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 24695198 - 24695302
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    |||||||||||||   ||||| ||||||||||| |||| | |||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||||    
T  24695198 gttgctctctcccgtagattaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcatttctttcattgtttatctttattgctttgat 24695297  T
Q  104 tatgc 108  Q
    |||||    
T  24695298 tatgc 24695302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8370517 - 8370625
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||  ||||    
T  8370517 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatcttt-gtgct 8370615  T
Q  99 ttgattatgc 108  Q
    ||||||||||    
T  8370616 ttgattatgc 8370625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 30709826 - 30709934
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||  |||||||||    
T  30709826 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatcttt-gtgctttgat 30709924  T
Q  104 tatgcctatg 113  Q
    ||||| ||||    
T  30709925 tatgcttatg 30709934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 40844702 - 40844601
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||| | |||| ||||||||||| |||| ||  ||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  40844702 tgctctctccccag-attaggtcatattggaccgaactgaatcaacaatcttggtgtgttcgttcatttctttcattgcttatctttattgctttgatta 40844604  T
Q  106 tgc 108  Q
    |||    
T  40844603 tgc 40844601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 36029149 - 36029056
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttat 94  Q
    |||| |||| |||||||| ||||| |||||||||||  ||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||||    
T  36029149 agagctgctttctcccccagattaggtcatattggacagaactgggtcaacaatctcggtgtgtttgttcctttctttcattgcttatctttat 36029056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 25795837 - 25795729
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| | ||||||||||| ||||||||||||||| | ||| ||||||||||| ||||||| ||    
T  25795837 agagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctttggtgtgtttgttcatttctttcattgcttatttttattgttt 25795738  T
Q  100 tgattatgc 108  Q
    | |||||||    
T  25795737 ttattatgc 25795729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 27453014 - 27452914
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||||||||| ||||||||||| |||| ||| |||||||||  ||||||||||||||||| ||| || ||||||||||||||||||    
T  27453014 agagctgctctctcccccggattaggtcatattggaccgaactggatcaacaatcttttggtgtgtttgttcct-tctttc-ttgcttatctttattgct 27452917  T
Q  99 ttg 101  Q
    |||    
T  27452916 ttg 27452914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 27974983 - 27975075
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  27974983 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattgcttatcttt 27975075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33386697 - 33386803
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||| |||||||||  |||||||||||||| || ||| ||||||||||||||||||| |    
T  33386697 agagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatcttttggtgtgtttgtttct-tctttcattgcttatctttattgtt 33386795  T
Q  99 ttgattat 106  Q
    ||| ||||    
T  33386796 ttggttat 33386803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 47923942 - 47924006
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttc 70  Q
    ||||||||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  47923942 tgctctctcccctagattaggtcatattggatcgaactgggtcaacaatcttggtgtgtttgttc 47924006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 27986477 - 27986577
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||| | ||| || ||||||||||||||||||    
T  27986477 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcat-tctttc-ttgcttatctttattgct 27986574  T
Q  99 ttg 101  Q
    |||    
T  27986575 ttg 27986577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 39040023 - 39040116
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    ||||||| ||||| |||| ||||| ||||||||||| |||| | |||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  39040023 agagttgttctcttccccagattaggtcatattggaccgaactaggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatcttt 39040116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 16264406 - 16264299
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| | |||||||||||  || |||||||||||||| ||| |||||| ||||||||  ||||    
T  16264406 agagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctttttgtgtgtttgttcctttctttcattgtttatcttt-gtgct 16264308  T
Q  99 ttgattatg 107  Q
    |||||||||    
T  16264307 ttgattatg 16264299  T

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Target: chr3; HSP #25
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 34491359 - 34491435
Alignment:
Q  32 ttggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||| |||| ||||| ||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  34491359 ttggaccgaactgggtgaacaatctttggtgtgtttgttcatttctttcattgcttatctttattgctttgattatg 34491435  T

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Target: chr3; HSP #26
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 32143377 - 32143277
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| | |||||||||||  ||||||||||||||| || || || ||||||||||||||||||    
T  32143377 agagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatcttttggtgtgtttgttcttc-ctttc-ttgcttatctttattgct 32143280  T
Q  99 ttg 101  Q
    |||    
T  32143279 ttg 32143277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 4386958 - 4387066
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttgg-tgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| || || |||||| || |   || ||||| ||||||||| | ||||||||||||| ||| ||||||||||||||||||| ||    
T  4386958 agagctgctctctcccccagagtaggtcatactgaactaaactgggtaaacaatctttgatgtgtttgttcctttctttcattgcttatctttattgttt 4387057  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  4387058 tgattatgc 4387066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 26928632 - 26928731
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt--ggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||||||||||||||||| ||||| |||||||||| | ||| |||||||||||||||  ||||||||||||| | ||| || | ||||||||||||||||    
T  26928632 agagttgctctctcccccagattaggtcatattggct-gaactgggtcaacaatcttttggtgtgtttgttctt-tctttc-tagcttatctttattgct 26928728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 29813187 - 29813255
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||  ||||| ||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  29813187 tctctcccccagatttggtcatgttggaccgaactgggtcaacaatctttgatgtgtttgttcctctct 29813255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 51398938 - 51399006
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| | ||||||||||| |||||||||||||||||||||    
T  51398938 tctctcccccagattaggtcaagttggaccgaacttggtcaacaatctttggtgtgtttgttcctctct 51399006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 35925519 - 35925446
Alignment:
Q  21 attatgtcatattggatcgaattgggtcaacaatctt--ggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||| |||| | |||||||||||||  ||||||||||||| | ||| |||||||| ||||||    
T  35925519 attaggtcatattggaccgaactaggtcaacaatcttttggtgtgtttgttcttttctttcattgctcatcttt 35925446  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 8126680 - 8126651
Alignment:
Q  78 tcattgcttatctttattgctttgattatg 107  Q
    ||||||||||||||||||||||||||||||    
T  8126680 tcattgcttatctttattgctttgattatg 8126651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 23410373 - 23410312
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgtt 69  Q
    ||||||||||  |||| ||||  ||||| |||||||||||||||||| ||||||||||||||    
T  23410373 tctctcccccaaattaggtcaagttggaacgaattgggtcaacaatctttggtgtgtttgtt 23410312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 29810992 - 29811060
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||  | |||||||||||||||||| ||||||||||||||| |||||    
T  29810992 tctctcccccagattaggtcaagttaaaccgaattgggtcaacaatctttggtgtgtttgttcatctct 29811060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 40734622 - 40734690
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  40734622 tctctcccccaaattaggtcaagttggaccgaactgggtcaacaatctttggagtgtttgttcctctct 40734690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 40735507 - 40735575
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||| ||||||| ||||| |||||||||||||    
T  40735507 tctctcccccagattaggtcaagttggaccgaactgggtcagcaatctttggtgtatttgttcctctct 40735575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 29159859 - 29159752
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29159859 agagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgcttt 29159760  T
Q  101 gattatgc 108  Q
    ||||||||    
T  29159759 gattatgc 29159752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9190049 - 9190156
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| || || ||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9190049 agagctgctctctcccccagactaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgcttt 9190148  T
Q  101 gattatgc 108  Q
    | ||||||    
T  9190149 gtttatgc 9190156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 6 - 113
Target Start/End: Original strand, 33332496 - 33332603
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  33332496 tgctctctcccccagattaggtcatattagatcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgatttgatta 33332595  T
Q  106 tgcctatg 113  Q
    ||| ||||    
T  33332596 tgcttatg 33332603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 20284140 - 20284038
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  20284140 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatttcttatctttattgctttgatta 20284041  T
Q  106 tgc 108  Q
    |||    
T  20284040 tgc 20284038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 2647742 - 2647844
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| || || ||||||||||  ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||    
T  2647742 tgctctctcccccagaataggtcatattgggccgaattgggtcaacaatcttgatgtgtttgttcctttctttcattgcttatctttattgctttgatta 2647841  T
Q  106 tgc 108  Q
    |||    
T  2647842 tgc 2647844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 4796713 - 4796815
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||| |||||||| ||||| ||||| ||||| |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  4796713 tgctttctcccccagattaggtcattttggaccgaactgggttaacaatcttggtgtgtttgttcctttctctcattgcttatctttattgctttgatta 4796812  T
Q  106 tgc 108  Q
    |||    
T  4796813 tgc 4796815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 2580446 - 2580338
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctc---tctcattgcttatctttattgc 97  Q
    |||| ||||||||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||||    
T  2580446 agagctgctctctcccccagactaggtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcctctcttttttcattgcttatctttattgc 2580347  T
Q  98 tttgattat 106  Q
    |||| ||||    
T  2580346 tttggttat 2580338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 46516356 - 46516458
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||||| ||||||||||||||    
T  46516356 tgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatctctattgctttgatta 46516455  T
Q  106 tgc 108  Q
    |||    
T  46516456 tgc 46516458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 23403059 - 23403161
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||| ||||| | ||||| |||||||| || |||||||||||||||||||| |||||||||||||| ||| ||||||||||| ||||||||||||||||    
T  23403059 tgctcactccctcagattaggtcatattagaccgaattgggtcaacaatcttagtgtgtttgttcctttctttcattgcttatatttattgctttgatta 23403158  T
Q  106 tgc 108  Q
    |||    
T  23403159 tgc 23403161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 21988955 - 21988857
Alignment:
Q  10 ctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatctttattgctttgattatg 107  Q
    |||||| || ||||| ||||||||||| |||| |||||||||||||| |||||||||||||| | ||| ||||||||||||||||||||||||||||||    
T  21988955 ctctcctccagattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttgttccttttctttcattgcttatctttattgctttgattatg 21988857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 9185213 - 9185311
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||| || || || |||||||| |||| ||||||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||    
T  9185213 ctctctcccccagactaggttatattggaccgaactgggtcaacaatcttggtgt--ttgttcctctctttcattgcttatctttattgctttgtttatg 9185310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 49091717 - 49091611
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    ||||||||||||| |||| ||||| |||||||||||   || ||||||||||||||||||| |||||||||| ||| |||||||||||||||  ||||||    
T  49091717 agagttgctctcttccccagattaggtcatattggactaaactgggtcaacaatcttggtgcgtttgttcctttctttcattgcttatcttt-gtgcttt 49091619  T
Q  101 gattatgc 108  Q
    ||||||||    
T  49091618 gattatgc 49091611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 43 - 108
Target Start/End: Original strand, 9235638 - 9235703
Alignment:
Q  43 tgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  9235638 tgggtcaacaatcttggtgtgtttgttcatttctttcattgcttatctttattgctttgattatgc 9235703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 21983340 - 21983233
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||| ||||  |||||||| | ||| || |||||||||| ||||||||    
T  21983340 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctcggtgcatttgttccttttctttcgttgcttatctctattgctt 21983241  T
Q  100 tgattatg 107  Q
    ||||||||    
T  21983240 tgattatg 21983233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 6 - 100
Target Start/End: Complemental strand, 35960867 - 35960773
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    ||||||||||||| ||||| ||||||||| | |||| | |||||||||||||||||||||||||| | ||  | ||| |||||||||||||||||    
T  35960867 tgctctctcccccagattaggtcatattgaaccgaactcggtcaacaatcttggtgtgtttgttcatttcattaatttcttatctttattgcttt 35960773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 55998 - 55897
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctct-ctctcattgcttatctttattgctttgatt 104  Q
    |||||||||||| | |||| ||||||||||| |||| |||||||| ||||||||||||||||||||| | ||  ||||||||||||||  ||||||||||    
T  55998 tgctctctccccag-attaggtcatattggaccgaactgggtcaataatcttggtgtgtttgttcctttccttccattgcttatcttt-gtgctttgatt 55901  T
Q  105 atgc 108  Q
    ||||    
T  55900 atgc 55897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 54 - 107
Target Start/End: Original strand, 22270143 - 22270196
Alignment:
Q  54 tcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||||||||||| ||| |||||| |||||||||||||||||||||||    
T  22270143 tcttggtgtgtttgttcctttctttcattgtttatctttattgctttgattatg 22270196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44848725 - 44848817
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| | ||| ||||||||| | |||| |||||||||||||  ||||||||| ||||||| ||| |||||||||||||||    
T  44848725 agagctgctctctcccccaggttaggtcatattgaaccgaactgggtcaacaatcttttggtgtgtatgttcct-tctttcattgcttatcttt 44848817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 30814560 - 30814637
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgctt 86  Q
    ||||||||||  |||| ||||  ||||| |||| |||||||||||| ||||||||||||||||| ||| |||||||||    
T  30814560 tctctcccccatattaggtcaagttggaccgaactgggtcaacaattttggtgtgtttgttcctttctttcattgctt 30814637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 47263725 - 47263627
Alignment:
Q  10 ctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    |||||||||  |||| ||||||||||| |||| |||||||||||||  |||||||||||||| || | | |||||||||||||||||| ||||| |||||    
T  47263725 ctctcccccatattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgtttct-tatttcattgcttatctttatt-ctttgtttatg 47263628  T

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Target: chr7; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 5817311 - 5817418
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| |||||||||||| | | || ||||||||||| |||| || || ||||||||| ||||||||||||||| |||  ||||||||||| ||||||  |    
T  5817311 agagctgctctctccccag-agtaggtcatattggaccgaactgagttaacaatctttggtgtgtttgttcctttcttacattgcttatcattattgtgt 5817409  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  5817410 tgattatgc 5817418  T

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Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 27347941 - 27348009
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  27347941 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 27348009  T

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Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28617266 - 28617334
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgtt 69  Q
    |||| ||||||||||||| || || ||||||||||| |||| ||||| |||||| ||||||||||||||    
T  28617266 agagctgctctctcccccagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgtt 28617334  T

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Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 48489555 - 48489623
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||| ||||||||| |||||||||||||||||||    
T  48489555 tctctcccccagattaggtcaagttggaccgaactgggtaaacaatctttggtgtgtttgttcctctct 48489623  T

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Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 2479374 - 2479301
Alignment:
Q  20 gattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    ||||| ||||||||| | |||| |||||||||||||  |||||||||||||| || ||| |||||||||||||||    
T  2479374 gattaggtcatattgaaccgaactgggtcaacaatcttttggtgtgtttgtttct-tctttcattgcttatcttt 2479301  T

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Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 41317478 - 41317417
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgtt 69  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| ||||||||||||||    
T  41317478 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtt 41317417  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 4586285 - 4586353
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatcttg-gtgtgtttgttcctctct 76  Q
    ||||||||||  |||||||||  ||||| |||| |||||| ||||||||  ||||||||||||||||||    
T  4586285 tctctcccccatattatgtcaacttggaccgaactgggtcgacaatctttcgtgtgtttgttcctctct 4586353  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 14069877 - 14069809
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||  ||||| ||||  ||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  14069877 tctctccccaagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtccctctct 14069809  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 14379905 - 14379837
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||  ||||| ||||  ||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  14379905 tctctcccctagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtccctctct 14379837  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 18408819 - 18408749
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| | |||||||| | ||| |||||||||||||  |||||||||||||||    
T  18408819 agagctgctctctcccccagattaggccatattggct-gaactgggtcaacaatcttttggtgtgtttgttc 18408749  T

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Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 31733013 - 31732945
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||| |||||| ||||||||||||||    
T  31733013 tctctcccccaaattaggtcaagttggaccgaactgggtcaacaatctttggtgagtttgttcctctct 31732945  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 41649055 - 41648987
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  41649055 tctctcccccaaattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 41648987  T

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Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 47676180 - 47676112
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  47676180 tctctcccccatattaggtcaagttggaccgaactggatcaacaatctttggtgtgtttgttcctctct 47676112  T

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Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10445485 - 10445592
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10445485 agagctgctctctcccccagattaggtcatattggaccgaactggatcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgcttt 10445584  T
Q  101 gattatgc 108  Q
    ||||||||    
T  10445585 gattatgc 10445592  T

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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 16940262 - 16940357
Alignment:
Q  13 tcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  16940262 tcccccagattatgtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatgc 16940357  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 17010927 - 17011022
Alignment:
Q  13 tcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  17010927 tcccccagattatgtcatattggaccgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatgc 17011022  T

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Target: chr2; HSP #4
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 20522273 - 20522169
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  20522273 gttgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcatttcttatctttattgctttgat 20522174  T
Q  104 tatgc 108  Q
    |||||    
T  20522173 tatgc 20522169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34682375 - 34682482
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||  |||    
T  34682375 agagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatatttatttgttt 34682474  T
Q  101 gattatgc 108  Q
    ||||||||    
T  34682475 gattatgc 34682482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 39482982 - 39482880
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||||  |||| ||||||||||| |||| | |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||    
T  39482982 tgctctctcccccatattaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcctctctttcattgtttatctttattgctttggtta 39482883  T
Q  106 tgc 108  Q
    |||    
T  39482882 tgc 39482880  T

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Target: chr2; HSP #7
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 17865256 - 17865152
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||||||| ||||| |||||||| ||  ||| ||||||||||||||||||||| |||||||| ||| |||||| |||||||||||||||||||    
T  17865256 gttgctctctcccccagattaggtcatattcgactgaactgggtcaacaatcttggtgtgattgttcctttctttcattgattatctttattgctttgat 17865157  T
Q  104 tatgc 108  Q
    |||||    
T  17865156 tatgc 17865152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 33528665 - 33528769
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||  |||  |||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||    
T  33528665 gttgctctctttcccatattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatctttattgctttgat 33528764  T
Q  104 tatgc 108  Q
    |||||    
T  33528765 tatgc 33528769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8040116 - 8040009
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| |||||||||||  ||| |||||||||||||||| ||| ||| ||||||||  |||||||||||||||||||||||    
T  8040116 agagctgctctctcccccagattaggtcatattggactgaactgggtcaacaatcttgatgtattttttcctctccttcattgcttatctttattgcttt 8040017  T
Q  101 gattatgc 108  Q
    ||||||||    
T  8040016 gattatgc 8040009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 33118187 - 33118085
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||||  |||| ||||||||||| |||| || | ||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||||    
T  33118187 tgctctctcccccaaattaggtcatattggaccgaactgagccaacaatcttggtgtgtttgttcctttctttcattgcttatctttattactttgatta 33118088  T
Q  106 tgc 108  Q
    |||    
T  33118087 tgc 33118085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 21629999 - 21629899
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||||||| | |||| |||||||||||  ||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  21629999 agagctgctctctccccag-attaggtcatattggactgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgcttt 21629901  T
Q  101 ga 102  Q
    ||    
T  21629900 ga 21629899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 14699053 - 14699133
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgctt 86  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||    
T  14699053 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgctt 14699133  T

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Target: chr2; HSP #13
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 13569384 - 13569278
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||| ||||||||||| ||||| ||| |||||| ||||||||  ||||||    
T  13569384 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaattttggtgtgtttattcctttctttcattgattatcttt-gtgcttt 13569286  T
Q  101 gattatgc 108  Q
    ||||||||    
T  13569285 gattatgc 13569278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 31056100 - 31055991
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctct-ctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||  ||||| ||||||||| | |||| | ||||||||||||| ||||||||||||||| | || |||||||||||||||||||||    
T  31056100 agagctgctctctcccctagattaggtcatattgaaccgaactaggtcaacaatctttggtgtgtttgttccttttctttcattgcttatctttattgct 31056001  T
Q  99 ttgattatgc 108  Q
    ||||||||||    
T  31056000 ttgattatgc 31055991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 34388907 - 34388823
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| ||| || ||| ||||||||    
T  34388907 ctctctcccccagattaggtcatattggaccgaattgggtcaacaatctcggtgtgtttgttcctttctttctttgtttatcttt 34388823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23078511 - 23078619
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    ||||||| ||||||||||  |||| |||||||||||||||| |||||||||| ||  ||||||||||||||||  ||| |||||||||||||||  ||||    
T  23078511 agagttgttctctcccccatattaggtcatattggatcgaactgggtcaacattcttttggtgtgtttgttccattctttcattgcttatcttt-gtgct 23078609  T
Q  99 ttgattatgc 108  Q
    ||||||||||    
T  23078610 ttgattatgc 23078619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 36757816 - 36757896
Alignment:
Q  14 cccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    ||||| ||||| ||||||||||| ||||||||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  36757816 cccccagattaggtcatattggaccgaattgggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatcttt 36757896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 8390191 - 8390297
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||||||||  |||| ||||| ||||| |||| |||||||||||| ||||||||||||||| | ||| |||| ||||||||||  ||||||    
T  8390191 agagctgctctctcccccaaattaggtcattttggaccgaactgggtcaacaattttggtgtgtttgttcatttctttcatcgcttatcttt-gtgcttt 8390289  T
Q  101 gattatgc 108  Q
    ||||||||    
T  8390290 gattatgc 8390297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 10707293 - 10707399
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    ||||||| ||||||||||  |||| ||||||||||| |||| |||||||||||||| ||||||||| ||| | ||| || ||||||||||||  ||||||    
T  10707293 agagttgttctctcccccatattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttattcatttctttctttgcttatcttt-gtgcttt 10707391  T
Q  101 gattatgc 108  Q
    ||||||||    
T  10707392 gattatgc 10707399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28259218 - 28259310
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| |||||||||||||  |||| ||||||||||| |||| |||||||||||||  |||||||||||||| || ||| |||||||||||||||    
T  28259218 agagctgctctctcccccaaattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgtttct-tctttcattgcttatcttt 28259310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 1345582 - 1345657
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaa--tcttggtgtgtttgttcctct 74  Q
    |||| ||||||||||||| || || ||||||||||| |||| |||||||||||  |||||||||||||||| ||||    
T  1345582 agaggtgctctctcccccagagtaggtcatattggaccgaactgggtcaacaatttcttggtgtgtttgtttctct 1345657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 38312364 - 38312432
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||||||||  ||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  38312364 tctctcccccagattatgtcaagttggaccgaactgggtcaacaatctttgatgtgtttgttcctctct 38312432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 2869741 - 2869847
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttc-ctctctctcattgcttatctttattgctttgattat 106  Q
    ||||||||||  || || ||||||||||| |||| ||||| |||||| ||||||||||||||| ||  || |  |||||||||||| ||||||||| |||    
T  2869741 ctctctcccctagagtaggtcatattggaccgaactgggtaaacaatattggtgtgtttgttctcttcctttatttgcttatctttgttgctttgaatat 2869840  T
Q  107 gcctatg 113  Q
    || ||||    
T  2869841 gcttatg 2869847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 38 - 108
Target Start/End: Complemental strand, 35397530 - 35397460
Alignment:
Q  38 cgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||| ||||| |||||| |||||||||||||| |  ||| ||||||||||| || ||||||||||||||||    
T  35397530 cgaactgggtaaacaatattggtgtgtttgtttccttctttcattgcttatattgattgctttgattatgc 35397460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 9 - 74
Target Start/End: Original strand, 36773686 - 36773752
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctct 74  Q
    |||||||||| ||||||||||  ||||| |||| ||||||||||||| |||||||||||||| ||||    
T  36773686 tctctcccccagattatgtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctct 36773752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 42039710 - 42039803
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||| | ||||| ||||||||||| |||| | | |||||||||  |||||||| ||| |||| ||| |||||||||||||||    
T  42039710 agagctgctctctcccacagattaggtcatattggaccgaactagatcaacaatcttttggtgtgcttgctcctttctttcattgcttatcttt 42039803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 723788 - 723720
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  723788 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 723720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 34139814 - 34139746
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  34139814 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 34139746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 17057413 - 17057346
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctc 75  Q
    |||||||||| || || ||||  ||||| |||| ||||||||||||| ||||||||||||||||||||    
T  17057413 tctctcccccagactaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctc 17057346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 75
Target Start/End: Complemental strand, 17085396 - 17085329
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctc 75  Q
    |||||||||| || || ||||  ||||| |||| ||||||||||||| ||||||||||||||||||||    
T  17085396 tctctcccccagactaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctc 17085329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 25398551 - 25398480
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc---ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| |||||||||| | ||| |||||||||||||   |||||||||||||||    
T  25398551 agagctgctctctcccccagattaggtcatattggct-gaactgggtcaacaatctttttggtgtgtttgttc 25398480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 11151634 - 11151569
Alignment:
Q  10 ctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctct 74  Q
    ||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||    
T  11151634 ctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctct 11151569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 2838076 - 2838124
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaat 54  Q
    ||||||||||||| || || ||||||||||| |||| ||||||||||||    
T  2838076 tgctctctcccccagagtaggtcatattggaccgaactgggtcaacaat 2838124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 3491806 - 3491736
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| | |||||||| | ||| |||||||||||||  |||||||||||||||    
T  3491806 agagctgctctctcccccagattaggccatattggct-gaactgggtcaacaatcttttggtgtgtttgttc 3491736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 5734 - 5632
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  5734 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 5635  T
Q  106 tgc 108  Q
    |||    
T  5634 tgc 5632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 2543 - 2441
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||| |||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  2543 tgctgtctcccccagattaggtcatattggagcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 2444  T
Q  106 tgc 108  Q
    |||    
T  2443 tgc 2441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 133321 - 133422
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| |||||||||||||  |||| ||||||||| | | || |||||||||||||  ||||||||||||||||| ||| ||||| |||||||||||||||    
T  133321 agagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattacttatctttattgct 133419  T
Q  99 ttg 101  Q
    |||    
T  133420 ttg 133422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 79; Significance: 4e-37; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 13598449 - 13598347
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  13598449 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 13598350  T
Q  106 tgc 108  Q
    |||    
T  13598349 tgc 13598347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 775721 - 775621
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  775721 ctctctcccccagattaggtcatattggaccgaattgggtcaacaatcttgatgtgtttgttcctttctttcattgcttatctttattgctttgattatg 775622  T
Q  108 c 108  Q
    |    
T  775621 c 775621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 29651862 - 29651760
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  29651862 tgctctctcccccagattaggtcatattggaccgaactgggtcaaaaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 29651763  T
Q  106 tgc 108  Q
    |||    
T  29651762 tgc 29651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 47703977 - 47704081
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  47703977 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgttttttcctttctttcattgcttatctttattgcttt 47704076  T
Q  101 gatta 105  Q
    |||||    
T  47704077 gatta 47704081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19072984 - 19072876
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||    
T  19072984 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctttggtgtgtttgttcctttctttcattgcttatctttattgttt 19072885  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  19072884 tgattatgc 19072876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 19120874 - 19120766
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||| ||    
T  19120874 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatctttggtgtgtttgttcctttctttcattgcttatctttattgttt 19120775  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  19120774 tgattatgc 19120766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 47098870 - 47098970
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||  ||||||||||| |||| |||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  47098870 tgctctctcccccagattcggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttgattgcttatctttattgctttgatta 47098969  T
Q  106 t 106  Q
    |    
T  47098970 t 47098970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9476317 - 9476210
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||  ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||||||| |||||||    
T  9476317 agagctgctctctcccctagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatcttttttgcttt 9476218  T
Q  101 gattatgc 108  Q
    ||||||||    
T  9476217 gattatgc 9476210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 27104413 - 27104520
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| || |||||||| |||| || ||||||||||||||||||||||||||| | | |||||||||||||||||||||||    
T  27104413 agagctgctctctcccccagattaggttatattggaccgaactgtgtcaacaatcttggtgtgtttgttcctttatttcattgcttatctttattgcttt 27104512  T
Q  101 gattatgc 108  Q
    ||||||||    
T  27104513 gattatgc 27104520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 47102887 - 47102987
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||  ||||| ||||||||||| |||| |||||||||||| ||||||||||||||||| ||| | ||||||||||||||||||||||||||    
T  47102887 tgctctctcccctagattaggtcatattggaccgaactgggtcaacaattttggtgtgtttgttcctttctttgattgcttatctttattgctttgatta 47102986  T
Q  106 t 106  Q
    |    
T  47102987 t 47102987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 16124562 - 16124664
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatctttattgctttgatt 104  Q
    ||||||||||||| ||||| ||||||||||| |||| || |||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||    
T  16124562 tgctctctcccccagattaggtcatattggaccgaactgagtcaacaatcttggtgtgtttgttccttttctttcatagcttatctttattgctttgatt 16124661  T
Q  105 atg 107  Q
    |||    
T  16124662 atg 16124664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 26644938 - 26645031
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  26644938 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcattgcttatcttt 26645031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 32889495 - 32889389
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctc-tctcattgcttatctttattgctt 99  Q
    |||| |||||| |||||| || || ||||||||||| |||| | | ||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  32889495 agagctgctctatcccccagactaggtcatattggaccgaactagatcaacaatcttggtgtgtttgttcctctcttttcattgcttatctttattgctt 32889396  T
Q  100 tgattat 106  Q
    || ||||    
T  32889395 tggttat 32889389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 3281764 - 3281671
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||| ||||  ||| ||||||||||||| ||| |||||||||||||||    
T  3281764 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaataatcttttgatgtgtttgttcctttctttcattgcttatcttt 3281671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 37069826 - 37069733
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| | | || ||||||||||||    
T  37069826 agagatgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttatttcgttgcttatcttt 37069733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 13604664 - 13604765
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| |||||||||||||  |||| ||||||||| | | || |||||||||||||  ||||||||||||||||| ||| ||||| |||||||||||||||    
T  13604664 agagctgctctctcccccatattaggtcatattgaacctaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattacttatctttattgct 13604762  T
Q  99 ttg 101  Q
    |||    
T  13604763 ttg 13604765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 37503601 - 37503533
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||||||||  |||||||||| | ||||||||||| |||||||||||||||||||||    
T  37503601 tctctcccccagattatgtcaagttggatcgaactaggtcaacaatctttggtgtgtttgttcctctct 37503533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 21536610 - 21536703
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||| ||  | |||| |||||||||||||  ||||||||||||||||| ||| |||| ||||||||||    
T  21536610 agagctgctctctcccccagattaggtcattttttaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcatcgcttatcttt 21536703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 107
Target Start/End: Original strand, 50521199 - 50521250
Alignment:
Q  56 ttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||||||||||||| ||| |||||| || ||||||||||||||||||||    
T  50521199 ttggtgtgtttgttcctttctttcattgtttctctttattgctttgattatg 50521250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 3156989 - 3157057
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  3156989 tctctcccccatattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 3157057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28220270 - 28220202
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  28220270 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtccctctct 28220202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 28265598 - 28265532
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctct 74  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||    
T  28265598 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctct 28265532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1055040 - 1055096
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttg 58  Q
    |||||||||||||||||| ||||| | |||||||| | ||| ||||||||||||||||    
T  1055040 agagttgctctctcccccagattaggccatattggct-gaactgggtcaacaatcttg 1055096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 113
Target Start/End: Original strand, 17345623 - 17345672
Alignment:
Q  64 tttgttcctctctctcattgcttatctttattgctttgattatgcctatg 113  Q
    ||||||| | ||| ||||||||||||||||| ||||||||||||| ||||    
T  17345623 tttgttcatttctttcattgcttatctttatggctttgattatgcttatg 17345672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 30476467 - 30476422
Alignment:
Q  32 ttggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  30476467 ttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 30476422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 834211 - 834143
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| || || ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  834211 tctctcccccagagtaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 834143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28223465 - 28223397
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||| ||||||||||||| |||||||    
T  28223465 tctctcccccatattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtccctctct 28223397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 44455284 - 44455352
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  || || |||| ||||||||| ||||| |||||||||||||||||||    
T  44455284 tctctcccccagattaggtcaagtttgaccgaactgggtcaacgatctttggtgtgtttgttcctctct 44455352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 49918474 - 49918542
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| | ||||||||||||| |||||||||||||||||||    
T  49918474 tctctcccccaaattaggtcaagttggaccgaactaggtcaacaatctttggtgtgtttgttcctctct 49918542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 4696642 - 4696743
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||    
T  4696642 tgctctctcccccagattaggtcatattggatcgaactgggtcaacaatcttggtgtgtttgttcatttctttcattgcttatctttattgctttgatta 4696741  T
Q  106 tg 107  Q
    ||    
T  4696742 tg 4696743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 26403271 - 26403378
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||||  | |||||||||||||||||||||||    
T  26403271 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctcgttttcattgcttatctttattgcttt 26403370  T
Q  101 gattatgc 108  Q
    ||||||||    
T  26403371 gattatgc 26403378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 9765860 - 9765968
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| ||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||    
T  9765860 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcattggtgtgtttgttcccttctttcattgcttatctttattgctt 9765959  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  9765960 tgattatgc 9765968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 23799623 - 23799724
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||| ||  |||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||    
T  23799623 tgctctctcctccaaattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctctattgctttgatta 23799722  T
Q  106 tg 107  Q
    ||    
T  23799723 tg 23799724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 19752435 - 19752542
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||  || || ||||||||||| |||| | |||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||    
T  19752435 agagctgctctctcccctagactaggtcatattggaccgaactaggtcaacaatcttggtgtgtttgttcctctctttcattacttatctctattgcttt 19752534  T
Q  101 gattatgc 108  Q
    ||||||||    
T  19752535 gattatgc 19752542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 5702529 - 5702631
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||||  |||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||  |||| |||||||| ||||||||| ||||    
T  5702529 tgctctctcccccatattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttccttcatagcttatctctattgctttaatta 5702628  T
Q  106 tgc 108  Q
    |||    
T  5702629 tgc 5702631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 19175795 - 19175888
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||||||||||||||||| ||||| ||||||||||| |||| | |||||||||||  || |||||||||||||| ||| |||||||||||||||    
T  19175795 agagttgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctttttgtgtgtttgttcctttctttcattgcttatcttt 19175888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6127277 - 6127169
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttgg-tgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| |||||||| ||||  |||| ||||||||||| |||| || ||||||||| || | ||||||||||| ||||| |||||||||||||||| |||||    
T  6127277 agagctgctctcttccccaaattaggtcatattggaccgaactgagtcaacaatatttgatgtgtttgttcatctctttcattgcttatctttagtgctt 6127178  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  6127177 tgattatgc 6127169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 29 - 108
Target Start/End: Complemental strand, 6813711 - 6813631
Alignment:
Q  29 atattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||||||| |||| ||||| ||||||||| ||| ||||||||||| ||| ||||| |||||||||||||||||||||||||    
T  6813711 atattggaccgaactgggttaacaatctttggtatgtttgttcctttctttcatttcttatctttattgctttgattatgc 6813631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 4456084 - 4455991
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt--ggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| | ||||||||| ||||  |||||| |||||||  ||||||||||||||| ||| |||||||||||||||    
T  4456084 agagctgctctctcccccagattaggccatattggaccgaaccgggtcagcaatcttttggtgtgtttgttcctttctttcattgcttatcttt 4455991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 7412397 - 7412304
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaa---tcttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| |||||||||||||  |||| ||||||||||| |||| |||||||||||   || |||||||||||||||| ||| |||||||||||||||    
T  7412397 agagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaattttcatggtgtgtttgttcct-tctttcattgcttatcttt 7412304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 4731782 - 4731850
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||  ||||  ||||| |||||||||||||||||| |||||||||||||||||||||    
T  4731782 tctctcccccagattcggtcaagttggaccgaattgggtcaacaatctttggtgtgtttgttcctctct 4731850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 15212910 - 15212978
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  15212910 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 15212978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 31071270 - 31071342
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc---ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| | |||||||||||   |||||||||||||||    
T  31071270 agagctgctctctcccccagattaggtcatattggaccgaactcggtcaacaatctttttggtgtgtttgttc 31071342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 4733830 - 4733898
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| |||||||||| |||| |||||||||||||||||||    
T  4733830 tctctcccccagattaggtcaagttggaccgaactgggtcaacagtctttggtgtgtttgttcctctct 4733898  T

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Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 33352274 - 33352342
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  33352274 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttgatgtgtttgttcctctct 33352342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 43036547 - 43036615
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    ||||||| || ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  43036547 tctctcctccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 43036615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 1261995 - 1262066
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc---ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| |||||||||| | ||| |||||||||||||   |||||||||||||||    
T  1261995 agagctgctctctcccccagattaggtcatattgg-ttgaactgggtcaacaatctttttggtgtgtttgttc 1262066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18870603 - 18870658
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt 57  Q
    |||| ||||||||||||| ||||| | |||||||||| ||| |||||||||||||||    
T  18870603 agagctgctctctcccccagattaggccatattggat-gaactgggtcaacaatctt 18870658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 27811402 - 27811470
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| ||||||||||| |||| ||||    
T  27811402 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgttttttcccctct 27811470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 6e-36; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 6 - 110
Target Start/End: Complemental strand, 39246045 - 39245941
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  39246045 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgttttgatta 39245946  T
Q  106 tgcct 110  Q
    |||||    
T  39245945 tgcct 39245941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 8 - 108
Target Start/End: Original strand, 42599622 - 42599722
Alignment:
Q  8 ctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    |||||||||||  ||||||||||||||||  |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||    
T  42599622 ctctctcccccatattatgtcatattggactgaattgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgattatg 42599721  T
Q  108 c 108  Q
    |    
T  42599722 c 42599722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 10047430 - 10047328
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||||||    
T  10047430 tgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgtttatctttattgctttgatta 10047331  T
Q  106 tgc 108  Q
    |||    
T  10047330 tgc 10047328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 3796560 - 3796668
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    ||||||||||||||||||  |||| |||||||||||  ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  3796560 agagttgctctctcccccatattaggtcatattggacggaactgggtcaacaatctttggtgtgtttgttcctctctttcattgcttatctttattgctt 3796659  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  3796660 tgattatgc 3796668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 38152480 - 38152586
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||  ||||||    
T  38152480 agagctgctctctcccccagattatgtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatcttt-gtgcttt 38152578  T
Q  101 gattatgc 108  Q
    ||||||||    
T  38152579 gattatgc 38152586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36315270 - 36315377
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||| |||||| |||||||||    
T  36315270 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattcttggtgtgtttgttcctttctttcattgtttatctctattgcttt 36315369  T
Q  101 gattatgc 108  Q
    ||||||||    
T  36315370 gattatgc 36315377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 36329479 - 36329586
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||| ||||||||||||||||||| ||| |||||| |||||| |||||||||    
T  36329479 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacattcttggtgtgtttgttcctttctttcattgtttatctctattgcttt 36329578  T
Q  101 gattatgc 108  Q
    ||||||||    
T  36329579 gattatgc 36329586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 24333865 - 24333758
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||||||||  |||| ||||||||||| |||| || || ||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  24333865 agagctgctctctcccccaaattaggtcatattggaccgaactgagttaacaatcttggtgtgtttgtttctttctttcattgcttatctttattgcttt 24333766  T
Q  101 gattatgc 108  Q
    ||||||||    
T  24333765 gattatgc 24333758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 5269237 - 5269339
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| |||| | |||||||||||||| ||||||||||||| ||| ||||| ||||| ||||||||||||||||    
T  5269237 tgctctctcccccagattaggtcatattggaccgaactaggtcaacaatcttgttgtgtttgttcctttctttcatttcttatatttattgctttgatta 5269336  T
Q  106 tgc 108  Q
    |||    
T  5269337 tgc 5269339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 26 - 108
Target Start/End: Complemental strand, 54867215 - 54867133
Alignment:
Q  26 gtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||    
T  54867215 gtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattactttgattatgc 54867133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 25862069 - 25862170
Alignment:
Q  7 gctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattat 106  Q
    ||||||| ||||  |||| ||||||||||| |||| || ||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  25862069 gctctcttccccatattaggtcatattggaccgaactgagtcaacaatcttggtgtgtttattcctttctttcattgcttatctttattgctttgattat 25862168  T
Q  107 gc 108  Q
    ||    
T  25862169 gc 25862170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5143315 - 5143209
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| | ||||||||||||  |||||||||||||| ||| ||||||||||||| ||||| |||    
T  5143315 agagctgctctctcccccagattaggtcatattggaccgaactaggtcaacaatctcagtgtgtttgttcctttctttcattgcttatctctattgtttt 5143216  T
Q  101 gattatg 107  Q
    |||||||    
T  5143215 gattatg 5143209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5147733 - 5147627
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||| |||||||  |||| ||||||||||| |||| |||||||||||||| ||||||||||||||| ||| ||||||||||||| ||||| |||    
T  5147733 agagctgctccctcccccaaattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttgttcctttctttcattgcttatctctattgtttt 5147634  T
Q  101 gattatg 107  Q
    |||||||    
T  5147633 gattatg 5147627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 3777586 - 3777499
Alignment:
Q  20 gattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    ||||| || |||||||| |||| |||||||||||||| ||||||||||||||| ||| |||||||||||||||  ||||||||||||||    
T  3777586 gattaggttatattggaccgaactgggtcaacaatctcggtgtgtttgttcctttctttcattgcttatcttt-gtgctttgattatgc 3777499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16623334 - 16623426
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatcttt 92  Q
    |||| |||||||||| || ||||| ||||||||| | |||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||    
T  16623334 agagctgctctctcctccagattaggtcatattgaaccgaactgggtcaacaatcttggtgtgtttgttccttttctttcattgcttatcttt 16623426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 9 - 108
Target Start/End: Original strand, 16630729 - 16630828
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcc-tctctctcattgcttatctttattgctttgattatg 107  Q
    ||||||| || ||||||||||||||||| |||| | ||||||||| ||||||||||||||||| | ||| ||||||||||||||| || |||||||||||    
T  16630729 tctctcctccagattatgtcatattggaccgaactaggtcaacaaccttggtgtgtttgttccttttctttcattgcttatctttgtt-ctttgattatg 16630827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 5396712 - 5396805
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| |||||||||| || ||||| ||||||||||| |||| |||||||||||||  ||||||||||| ||||| ||| |||||||||||||||    
T  5396712 agagctgctctctcctccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttcttcctttctttcattgcttatcttt 5396805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 6743461 - 6743563
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttat-tgctttgatt 104  Q
    |||||||||||   ||||| ||||||||||| |||| ||||||||| |||||||||||||||||||| |||  |||| ||||||| ||| ||||||||||    
T  6743461 tgctctctcccgtagattaggtcatattggaccgaactgggtcaac-atcttggtgtgtttgttcctttcttccatttcttatctctatatgctttgatt 6743559  T
Q  105 atgc 108  Q
    ||||    
T  6743560 atgc 6743563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 31985675 - 31985774
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| |||||||||||| | |||| ||||||||||| |||| |||||||||||||  ||||||||||||||| || || || ||||||||||||||||||    
T  31985675 agagctgctctctccccag-attaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcttc-ctttc-ttgcttatctttattgct 31985771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 12739594 - 12739526
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  12739594 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 12739526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 26175680 - 26175612
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||||||||||    
T  26175680 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 26175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 34570458 - 34570390
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| || |  |||||||||| ||||||||||||| |||||||||||||||||||||    
T  34570458 tctctcccccagattaggttaagttggatcgaactgggtcaacaatctttggtgtgtttgttcctctct 34570390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 8689533 - 8689617
Alignment:
Q  10 ctctcccccggattatgtcatattggatcgaattgggtcaacaatctt--ggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||||||||  ||||  |||||||||| |||| ||| |||||||||||  |||||||||||| || ||| |||||||||||||||    
T  8689533 ctctcccccatattagatcatattggaccgaactggatcaacaatcttttggtgtgtttgttactttctttcattgcttatcttt 8689617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 12743969 - 12743901
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  12743969 tctctcccccatattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 12743901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 12745358 - 12745290
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    ||||||||||  |||| ||||  ||||| |||| ||||||||||||||| |||||||||||||||||||    
T  12745358 tctctcccccatattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgttcctctct 12745290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 9927502 - 9927436
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctct 74  Q
    |||||||||| ||||| ||||  ||||| |||| || |||||||||| |||||||||||||||||||    
T  9927502 tctctcccccagattaggtcaagttggaccgaactgagtcaacaatctttggtgtgtttgttcctct 9927436  T

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Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 74
Target Start/End: Complemental strand, 48893682 - 48893616
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctct 74  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||    
T  48893682 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctct 48893616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 78 - 107
Target Start/End: Original strand, 21688441 - 21688470
Alignment:
Q  78 tcattgcttatctttattgctttgattatg 107  Q
    ||||||||||||||||||||||||||||||    
T  21688441 tcattgcttatctttattgctttgattatg 21688470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 5429803 - 5429871
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| || |  ||||| |||| ||||||||||||| ||| |||||||||||||||||    
T  5429803 tctctcccccagattaggttaagttggaccgaactgggtcaacaatctttgatgtgtttgttcctctct 5429871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 45357325 - 45357380
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt 57  Q
    |||| ||||||||||||| ||||||| |||||||| | ||| |||||||||||||||    
T  45357325 agagctgctctctcccccagattatgccatattggct-gaactgggtcaacaatctt 45357380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 54199950 - 54199883
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| |||||||||||| || |||||||||||||||||||    
T  54199950 tctctcccccagattaggtcaagttgga-cgaactgggtcaacaatttttggtgtgtttgttcctctct 54199883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 10785 - 10678
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||||||||  |||| ||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  10785 agagctgctctctcccccaaattaggtcatattggaccgaactgggtcaataatcttggtgtgtttgttcctctctttcattgcttatctttattgcttt 10686  T
Q  101 gattatgc 108  Q
    ||||||||    
T  10685 gattatgc 10678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 2e-35; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17004001 - 17004108
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||    
T  17004001 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatcttttttgcttt 17004100  T
Q  101 gattatgc 108  Q
    ||||||||    
T  17004101 gattatgc 17004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 42127456 - 42127558
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||    
T  42127456 tgctctctcccccagattaggtcatattagatcgaactgggtcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgttttgatta 42127555  T
Q  106 tgc 108  Q
    |||    
T  42127556 tgc 42127558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 31300637 - 31300741
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||||| ||||||||| | || || ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||    
T  31300637 agagtttctctctccctcagactaggtcatattggaccgaactgggtcaacaatcttggtgtgtttgttcctctctttcattgcttatctttattgtttt 31300736  T
Q  101 gatta 105  Q
    |||||    
T  31300737 gatta 31300741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 24553552 - 24553654
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||   ||||| ||||||||||| |||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  24553552 tgctctctcccatagattaggtcatattggaccgaactggatcaacaatcttggtgtgtttgttcctttctttcattgcttatctttattgctttgatta 24553651  T
Q  106 tgc 108  Q
    |||    
T  24553652 tgc 24553654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 11917013 - 11917109
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgc 97  Q
    |||| |||||||||||||  |||| ||||||||||| |||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11917013 agagctgctctctcccccatattaggtcatattggaccgaactgggtcaacaatctcggtgtgtttgttcctttctctcattgcttatctttattgc 11917109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 28832310 - 28832208
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    ||||||||||||| ||||| ||||||||||| ||||  ||||||||||||||||||||||||||  | ||| ||||||||||||||||||| ||||||||    
T  28832310 tgctctctcccccagattaggtcatattggaccgaaccgggtcaacaatcttggtgtgtttgtttgtttctttcattgcttatctttattgatttgatta 28832211  T
Q  106 tgc 108  Q
    |||    
T  28832210 tgc 28832208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 19588797 - 19588695
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgatta 105  Q
    |||||||||||   |||||  |||||||||| |||| ||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||    
T  19588797 tgctctctccctaagattagttcatattggaccgaactgggtcaacaatctttgagtgtttgttcctttctttcattgcttatctttattgctttgatta 19588698  T
Q  106 tgc 108  Q
    |||    
T  19588697 tgc 19588695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3880355 - 3880249
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgcttt 100  Q
    |||| |||||||| || | ||||| |||||||||||  ||| ||  ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||    
T  3880355 agagctgctctctgcctcagattaggtcatattggacagaactgaatcaacaatcttggtgtgtt-gttcctttctttcattgcttatctttattgcttt 3880257  T
Q  101 gattatgc 108  Q
    ||||||||    
T  3880256 gattatgc 3880249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 9353373 - 9353465
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  9353373 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattgcttatcttt 9353465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 6741908 - 6741800
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctctctcattgcttatctttattgctt 99  Q
    |||| |||||| |||||| || |||||||||||| | |||| || || || |||||| ||||||||||||| | ||| ||||||||||||||||||||||    
T  6741908 agagctgctctatcccccagagtatgtcatattgaaccgaactgtgttaataatctttggtgtgtttgttcatttctttcattgcttatctttattgctt 6741809  T
Q  100 tgattatgc 108  Q
    |||||||||    
T  6741808 tgattatgc 6741800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 15464588 - 15464482
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| |||||  |||||||||| |||| |||||||||||||  |||||||||||||| || ||| ||||||||||||||||||| |    
T  15464588 agagctgctctctcccccagattagatcatattggaccgaactgggtcaacaatcttttggtgtgtttgtttct-tctttcattgcttatctttattgtt 15464490  T
Q  99 ttgattat 106  Q
    ||| ||||    
T  15464489 ttggttat 15464482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 36932391 - 36932483
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| | | |||||||||||||||    
T  36932391 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcct-tttttcattgcttatcttt 36932483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 11181925 - 11181980
Alignment:
Q  53 atcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatgc 108  Q
    |||||||||||||||||| | ||| |||||||||||||||||||||||||||||||    
T  11181925 atcttggtgtgtttgttcatttctttcattgcttatctttattgctttgattatgc 11181980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 12084216 - 12084324
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatctt--ggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| |||||||| ||||  |||| |||||| |||| |||| |||||||||||| ||  ||||||||||||||| ||| |||||||||||||||  ||||    
T  12084216 agagctgctctctgccccatattaggtcatagtggaccgaactgggtcaacaatattttggtgtgtttgttcctttctttcattgcttatcttt-gtgct 12084314  T
Q  99 ttgattatgc 108  Q
    ||||||||||    
T  12084315 ttgattatgc 12084324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 14520286 - 14520193
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||| ||||  ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| ||| |||||||||||    
T  14520286 agagctgctctcccccctagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttctttcagtgcttatcttt 14520193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 10281807 - 10281722
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctctctcattgct 85  Q
    |||| ||||||||||||| ||| | ||||||||||| |||| ||||||||||||| ||||||||||||||||| ||| || |||||    
T  10281807 agagctgctctctcccccagatcaggtcatattggaccgaactgggtcaacaatctttggtgtgtttgttcctttctttctttgct 10281722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 32 - 107
Target Start/End: Original strand, 28278463 - 28278539
Alignment:
Q  32 ttggatcgaattgggtcaacaat-cttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    ||||| |||| ||||| |||||| |||||||||||| || || ||| ||||||||||||||||||||||||||||||    
T  28278463 ttggaccgaactgggtgaacaattcttggtgtgtttctttctttctttcattgcttatctttattgctttgattatg 28278539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 38747163 - 38747227
Alignment:
Q  43 tgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgattatg 107  Q
    |||||||| ||||||||||  ||||||||| ||| | ||||||||||||||||||||||||||||    
T  38747163 tgggtcaataatcttggtggatttgttcctttctttaattgcttatctttattgctttgattatg 38747227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 28750699 - 28750631
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| ||||||||||||| |||| |||||||||||||||||||||    
T  28750699 tctctcccccagattaggtcaagttggaccgaattgggtcaataatctttggtgtgtttgttcctctct 28750631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 33030981 - 33031088
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttgg-tgtgtttgttcctctctct-cattgcttatctttattgct 98  Q
    |||| ||||||||||||| || ||||||||||| || |||| ||  | ||||||||| | ||||||||||||| | | | ||||| ||||||||||||||    
T  33030981 agagctgctctctcccccagagtatgtcatatttgaccgaactgaattaacaatctttgatgtgtttgttcctttattttcattggttatctttattgct 33031080  T
Q  99 ttgattat 106  Q
    ||||||||    
T  33031081 ttgattat 33031088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 5887478 - 5887410
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||||||| ||||||||| |||||||||||||| ||||||    
T  5887478 tctctcccccagattaggtcaagttggaccgaattggatcaacaatctttggtgtgtttgtttctctct 5887410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 19806487 - 19806555
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||| ||||||||||||||||    
T  19806487 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggggtgtttgttcctctct 19806555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 32636948 - 32637016
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatc-ttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||||| |||||||||||||| ||||||    
T  32636948 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatctttggtgtgtttgtttctctct 32637016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 35387718 - 35387647
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc---ttggtgtgtttgttc 70  Q
    |||| ||||||||||||| ||||| | |||||||| | |||||||||||||||||   |||||||||||||||    
T  35387718 agagctgctctctcccccagattaggccatattggct-gaattgggtcaacaatctttttggtgtgtttgttc 35387647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 8565990 - 8565930
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgtt 69  Q
    |||||| ||| ||||| ||||  ||||| |||| | |||||||||||||||||||||||||    
T  8565990 tctctcacccagattaggtcaagttggaccgaactaggtcaacaatcttggtgtgtttgtt 8565930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 30682966 - 30682899
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaatctt-ggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||| ||||||||||| |||||||||||||||||||    
T  30682966 tctctcccccagattaggtcaagttggaccgaactgg-tcaacaatctttggtgtgtttgttcctctct 30682899  T

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Target: scaffold0140 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 8460 - 8566
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatctttattgct 98  Q
    |||| ||||||||||||| ||||| ||||||||||| |||| |||||||||||||  |||||||||||||| || ||| ||||||||||||||||||| |    
T  8460 agagctgctctctcccccagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgtttct-tctttcattgcttatctttattgtt 8558  T
Q  99 ttgattat 106  Q
    ||| ||||    
T  8559 ttggttat 8566  T

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Target: scaffold0176 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 4 - 108
Target Start/End: Complemental strand, 17316 - 17212
Alignment:
Q  4 gttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatctttattgctttgat 103  Q
    ||||||||||  |||  |||| ||||||||| | |||| |||||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||| ||    
T  17316 gttgctctctttcccatattaggtcatattgaaccgaactgggtcaacaattttggtgtgtttgctcctttctttcatttcttatctttattgctttaat 17217  T
Q  104 tatgc 108  Q
    |||||    
T  17216 tatgc 17212  T

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Target: scaffold0036 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 92
Target Start/End: Complemental strand, 85733 - 85648
Alignment:
Q  7 gctctctcccccggattatgtcatattggatcgaattgggtcaacaatcttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||||||||||| ||||| |||||||||||  ||| |||||||||||||| | ||||||||||| | ||| |||||||||||||||    
T  85733 gctctctcccccagattaggtcatattggactgaactgggtcaacaatctagatgtgtttgttcttttctttcattgcttatcttt 85648  T

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Target: scaffold0087 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 44002 - 44094
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| || ||  |||||||||| |||| |||||||||||||  ||||||||||||||||| ||| |||||||||||||||    
T  44002 agagctgctctctcccccagaatagatcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcct-tctttcattgcttatcttt 44094  T

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Target: scaffold0087; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 92
Target Start/End: Original strand, 36878 - 36966
Alignment:
Q  6 tgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||||||| |||  ||||| ||||||||||| |||| |||||||||||||  ||||||||||||||||| ||| | |||||||||||||    
T  36878 tgctctcttccctagattaggtcatattggaccgaactgggtcaacaatcttttggtgtgtttgttcctttcttttattgcttatcttt 36966  T

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Target: scaffold0098 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45309 - 45217
Alignment:
Q  1 agagttgctctctcccccggattatgtcatattggatcgaattgggtcaacaatc--ttggtgtgtttgttcctctctctcattgcttatcttt 92  Q
    |||| ||||||||||||| ||||| ||||||||| | |||| || ||||||||||  ||||||||||||||| | ||| |||||||||||||||    
T  45309 agagctgctctctcccccagattaggtcatattgaaccgaactgagtcaacaatcttttggtgtgtttgttcat-tctttcattgcttatcttt 45217  T

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Target: scaffold0066 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 9 - 76
Target Start/End: Complemental strand, 20459 - 20391
Alignment:
Q  9 tctctcccccggattatgtcatattggatcgaattgggtcaacaa-tcttggtgtgtttgttcctctct 76  Q
    |||||||||| ||||| ||||  ||||| |||| ||||||||||| | |||||||||||||||||||||    
T  20459 tctctcccccagattaggtcaagttggaccgaactgggtcaacaatttttggtgtgtttgttcctctct 20391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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