View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0610_low_7 (Length: 546)
Name: NF0610_low_7
Description: NF0610
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0610_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 1e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 199 - 411
Target Start/End: Complemental strand, 28147371 - 28147161
Alignment:
| Q |
199 |
ttatagatttattatattttgaaaatatttaatttttacatgtttaaagggaaatacgatctcttgcttgtaaacttagagaagtgttgtccnnnnnnnn |
298 |
Q |
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| T |
28147371 |
ttatagatttattatattttgaaaatatttaatttttacatgtttaaagggaaatatgatctcttgcttgtaaacttagagaagtgttgtcctttttgtt |
28147272 |
T |
|
| Q |
299 |
nnnngttgttaaagcttccaagtcgatatcaacgttaaaatatttaaattcaaacaaaaactatataaattctattggtattaccatcttcttggaacgt |
398 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28147271 |
ttt-gttgttaaagcttcgaagtcgatatcaacgttaaaatatttaa-ttcaaacaaaaactatataaattctattggtattaccatcttcttggaacgt |
28147174 |
T |
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| Q |
399 |
taactaatggtcg |
411 |
Q |
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| T |
28147173 |
taactaatggtcg |
28147161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 99 - 218
Target Start/End: Complemental strand, 28147503 - 28147384
Alignment:
| Q |
99 |
tttacatgaggttataattcagcaaatataaaaacttattagaaatgatgttttttaacgaataataattccaactaatataaaaacttaggctgagacc |
198 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28147503 |
tttacataaggttataattcagcaaatataaaaacttattagaaatgatgttttttaacgaataataattccaactaatataaaaacttaggctgagacc |
28147404 |
T |
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| Q |
199 |
ttatagatttattatatttt |
218 |
Q |
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||||||||||||||| |||| |
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| T |
28147403 |
ttatagatttattatgtttt |
28147384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 28151529 - 28151464
Alignment:
| Q |
121 |
caaatataaaaacttattagaaatgatgttttttaacgaataataattccaactaatataaaaactt |
187 |
Q |
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| T |
28151529 |
caaatataaaaacttattagaaatgatgttttttatcaattaattattccaact-atataaaaactt |
28151464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 483 - 517
Target Start/End: Complemental strand, 28147155 - 28147121
Alignment:
| Q |
483 |
taatctattcaatatgaaactcttaacacaggttc |
517 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
28147155 |
taatctattcaatatgaaactcttaacacatgttc |
28147121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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